PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G206700.1.p | ||||||||
Common Name | GLYMA_01G206700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 276aa MW: 30694.5 Da PI: 6.1638 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.8 | 8.4e-21 | 136 | 186 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta eAaka+++a+ +l+g Glyma.01G206700.1.p 136 HYRGVRQRP-WGKFAAEIRDPNKRG--SRVWLGTFDTAIEAAKAYDRAAFRLRG 186 8********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.09E-32 | 135 | 194 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.2E-32 | 135 | 195 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.223 | 136 | 194 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-37 | 136 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 136 | 195 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-14 | 136 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 137 | 148 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-13 | 176 | 196 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 276 aa Download sequence Send to blast |
MANSLEVSAL NRIKLHLLGE LSPLPLTTSS QSSSICSQSS CSDSSATLDQ IFSEFLYFPT 60 SSSENHFSAL EFEAKPEIIY LETPNPQLEF TSLTTQDSKK PQSSRKPSLQ ISLPKKTEWI 120 QFGDPESNPN AEEKKHYRGV RQRPWGKFAA EIRDPNKRGS RVWLGTFDTA IEAAKAYDRA 180 AFRLRGSKAI LNFPLEAGAD DRKRQREEQE EEPAVEVVKR VKVEESDVSR IKETPLTPSS 240 WLGFWGGDSN GIFTVPPLSP LSPHPALGFP QLMVV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-31 | 135 | 195 | 1 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.41651 | 0.0 | flower| hypocotyl| leaf| pod| root| seed coat |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G206700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095987 | 0.0 | BT095987.1 Soybean clone JCVI-FLGm-15G18 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025984674.1 | 1e-156 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor 5-like | ||||
Refseq | XP_028246056.1 | 1e-156 | ethylene-responsive transcription factor 5-like | ||||
Swissprot | O80341 | 5e-66 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A0R0LEF9 | 0.0 | A0A0R0LEF9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA11G03900.1 | 1e-139 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17490.1 | 4e-52 | ethylene responsive element binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G206700.1.p |
Publications ? help Back to Top | |||
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