PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G202900.1.p | ||||||||
Common Name | GLYMA_01G202900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 317aa MW: 36201.4 Da PI: 6.6929 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 32.4 | 3.1e-10 | 93 | 147 | 37 | 90 |
FAR1 37 kegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 k+g+re++ + ++++r++++etr++Ckak++v+ + + +w +t++ H+Hel Glyma.01G202900.1.p 93 KKGRREDRGLTsETRKREPKKETRCDCKAKFRVHVDLHCQWSITEFTDLHSHELL 147 456666665555778899***********************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-8 | 93 | 147 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.0E-32 | 191 | 282 | IPR018289 | MULE transposase domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MGENDESGGE DGEHTDPLSS MDGVGEEGDL FGGGGSGNEE HGKIIINALI DIVDIVMKNL 60 EADVVKRLDF GDLEAAYEFY YWYARINGFC IRKKGRREDR GLTSETRKRE PKKETRCDCK 120 AKFRVHVDLH CQWSITEFTD LHSHELLEDS LCSMLPAHRR MTVADILLIE NFRKVGIRPP 180 PILGAFANSS AFDATYRKNK YMFPFVIFLG VNHHNQTIVF ATSLVSNETE QTYVWLLEQF 240 KDVMKGKEPF SLITDGDLVI RNSIRRVFPR AHHRLCAWHL LWNANSHVCN PAMMNYLKNC 300 LLIMMYPNLK NYGCIC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G202900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003622126.2 | 1e-77 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A0R0LEB6 | 0.0 | A0A0R0LEB6_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445M5P0 | 0.0 | A0A445M5P0_GLYSO; Protein FAR1-RELATED SEQUENCE 5 | ||||
STRING | GLYMA01G41133.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-26 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G202900.1.p |