PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G199200.3.p | ||||||||
Common Name | GLYMA_01G199200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LSD | ||||||||
Protein Properties | Length: 146aa MW: 15186.8 Da PI: 8.0696 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.3 | 1.3e-13 | 30 | 54 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V Glyma.01G199200.3.p 30 CSGCRNLLLYPVGATSVCCAVCNAV 54 ************************9 PP | |||||||
2 | zf-LSD1 | 44.8 | 2e-14 | 67 | 91 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+t L+Y rGA+sV+C++C+tV Glyma.01G199200.3.p 67 CGGCHTFLMYIRGATSVQCSCCHTV 91 ************************9 PP | |||||||
3 | zf-LSD1 | 34.6 | 3.2e-11 | 105 | 129 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+ lL+Y +GA+sV+Ca+C +V Glyma.01G199200.3.p 105 CGNCKMLLRYQYGARSVKCAVCSFV 129 **********************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 1.1E-12 | 27 | 57 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.4E-10 | 30 | 54 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 0.001 | 44 | 126 | No hit | No description |
TIGRFAMs | TIGR01053 | 1.7E-14 | 64 | 93 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 6.2E-12 | 67 | 91 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.1E-9 | 102 | 131 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.4E-10 | 105 | 129 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MLVPLAPYPP PPPPAPYTPP PNGAQSQLVC SGCRNLLLYP VGATSVCCAV CNAVTTVPPP 60 EMAQLVCGGC HTFLMYIRGA TSVQCSCCHT VNLALEANLV AHVNCGNCKM LLRYQYGARS 120 VKCAVCSFVT SVGASTSTTE QKFST* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G199200.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136945 | 1e-128 | BT136945.1 Lotus japonicus clone JCVI-FLLj-13N7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021593714.1 | 5e-83 | protein LOL1 | ||||
Refseq | XP_021593716.1 | 5e-83 | protein LOL1 | ||||
Refseq | XP_021593717.1 | 5e-83 | protein LOL1 | ||||
Refseq | XP_021593718.1 | 5e-83 | protein LOL1 | ||||
Swissprot | Q93ZB1 | 1e-74 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | A0A0R0LKF0 | 1e-98 | A0A0R0LKF0_SOYBN; Uncharacterized protein | ||||
STRING | cassava4.1_018557m | 2e-82 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-63 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G199200.3.p |
Publications ? help Back to Top | |||
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