PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G188600.1.p | ||||||||
Common Name | GLYMA_01G188600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 169aa MW: 18554 Da PI: 9.7364 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.4 | 3.1e-17 | 27 | 76 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykG+r +k +g+WvAeIr+p +kr r++lg++ t+ Aa+a++ a +l+g Glyma.01G188600.1.p 27 RYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYSTPVAAARAYDTAVFYLRG 76 7******99.**********9...336*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 5.7E-30 | 27 | 85 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-38 | 27 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.313 | 27 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-21 | 27 | 85 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.0E-11 | 27 | 76 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.27E-26 | 27 | 86 | No hit | No description |
PRINTS | PR00367 | 2.5E-11 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 66 | 86 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MESEGRREGG ERETTAATRK VEGAERRYKG IRMRKWGKWV AEIREPNKRS RIWLGSYSTP 60 VAAARAYDTA VFYLRGPSAR LNFPELLVRE GPAALVAGCD MSAASIRKKA TEVGARVDAL 120 QATLHHHYVP PRQLLSGGGG GSGDFPVRVV DLNKMPEPES SDCEWDVN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-14 | 26 | 84 | 4 | 63 | ATERF1 |
3gcc_A | 2e-14 | 26 | 84 | 4 | 63 | ATERF1 |
5wx9_A | 2e-14 | 23 | 85 | 9 | 73 | Ethylene-responsive transcription factor ERF096 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3202 | 0.0 | hypocotyl| leaf| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G188600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC170860 | 0.0 | AC170860.16 Glycine max cultivar Williams 82 clone gmw1-57d24, complete sequence. | |||
GenBank | EF051448 | 0.0 | EF051448.1 Glycine soja isolate 3-5 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051449 | 0.0 | EF051449.1 Glycine soja isolate 3-6 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051451 | 0.0 | EF051451.1 Glycine soja isolate 3-7 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051453 | 0.0 | EF051453.1 Glycine soja isolate 4-12 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051454 | 0.0 | EF051454.1 Glycine soja isolate 4-22 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051455 | 0.0 | EF051455.1 Glycine soja isolate 4-19 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051457 | 0.0 | EF051457.1 Glycine soja isolate 3-3 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051458 | 0.0 | EF051458.1 Glycine soja isolate 3-14 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051459 | 0.0 | EF051459.1 Glycine soja isolate 3-1 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051460 | 0.0 | EF051460.1 Glycine soja isolate 3-11 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051461 | 0.0 | EF051461.1 Glycine soja isolate 3-2 dehydration responsive element-binding protein 1 gene, complete cds. | |||
GenBank | EF051462 | 0.0 | EF051462.1 Glycine soja isolate 4-17 dehydration responsive element-binding protein 1 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238164.2 | 1e-121 | DNA-binding domain-containing protein | ||||
Refseq | XP_028243823.1 | 1e-121 | ethylene-responsive transcription factor ERF011-like | ||||
Swissprot | Q9FH94 | 3e-52 | ERF10_ARATH; Ethylene-responsive transcription factor ERF010 | ||||
Swissprot | Q9SNE1 | 2e-52 | ERF11_ARATH; Ethylene-responsive transcription factor ERF011 | ||||
TrEMBL | A9NJI8 | 1e-119 | A9NJI8_GLYSO; Dehydration responsive element-binding protein 1 | ||||
TrEMBL | I1J993 | 1e-119 | I1J993_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G39540.1 | 1e-120 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1290 | 32 | 106 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67190.1 | 4e-54 | DREB and EAR motif protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G188600.1.p |
Publications ? help Back to Top | |||
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