PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G188400.1.p | ||||||||
Common Name | GLYMA_01G188400, LOC100801975 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 503aa MW: 55637.5 Da PI: 8.1779 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.4 | 6.4e-17 | 149 | 198 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Glyma.01G188400.1.p 149 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 198 78*******************......55************************997 PP | |||||||
2 | AP2 | 43.8 | 6.3e-14 | 241 | 291 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + +k+++lg f+t+ eAa+a+++a+ k +g Glyma.01G188400.1.p 241 SKYRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEIEAARAYDKAAIKCNG 291 89********.7******5553..2.26**********99**********99776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.15E-16 | 149 | 207 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 5.8E-9 | 149 | 198 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.31E-11 | 150 | 207 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.5E-17 | 150 | 206 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.596 | 150 | 206 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.9E-32 | 150 | 212 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.82E-25 | 241 | 301 | No hit | No description |
Pfam | PF00847 | 1.3E-9 | 241 | 291 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.82E-17 | 241 | 301 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-16 | 242 | 299 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.461 | 242 | 299 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.4E-31 | 242 | 305 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 243 | 254 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.7E-6 | 281 | 301 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MWDLNDSPDQ RKDYESEGCS SSLYDDKGKR VASVSNSSSS AVVVEDGSEE EDSERGGSRT 60 LDNKKTNKIF GFSVAHDDSD HPPVTHQFFP VEDSELPVTA AAAAAGSSFP RAHWVGVKFC 120 QSETPGAGKA VKVSEPMKKS RRGPRSRSSQ YRGVTFYRRT GRWESHIWDC GKQVYLGGFD 180 TAHAAARAYD RAAIKFRGVE ADINFNIEDY EEDLKQMTNL TKEEFVHVLR RQSTGFPRGS 240 SKYRGVTLHK CGRWEARMGQ FLGKKYVYLG LFDTEIEAAR AYDKAAIKCN GKEAVTNFDP 300 SIYDGELNSE SSGGVAADHN LDLSLGNLIS KHSNSQSSRN HFPNSATDQH MPPESNWQSG 360 GSKPKVHLVN ILPKPCGRSN MEAYGQGESE TLRLLSQTHL QSPTTKEMHR YGPYRSPAEP 420 QMPHNFAHHL HQPSFHVPSS SSNRGRIGSD LSLSMSDQQQ WQQAGPPHLL ATAAASSGFP 480 QQIRPSQGWL QKNGFHSLMR PS* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22746 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| seed coat| somatic embryo| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: It is detectable at low levels throughout the shoot apex and at enhanced levels in the inflorescence meristem, young floral buds and throughout the early stages of flower development and organogenesis. During floral organ differentiation it becomes spatially restricted to specific organ, tissue and cell types within the flower. | |||||
Uniprot | TISSUE SPECIFICITY: Sepals, petals, stamens, carpels, developing ovules, inflorescence stem, leaf and stem. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G188400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC170860 | 0.0 | AC170860.16 Glycine max cultivar Williams 82 clone gmw1-57d24, complete sequence. | |||
GenBank | KF220834 | 0.0 | KF220834.1 Glycine max cultivar Williams 82K clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220835 | 0.0 | KF220835.1 Glycine max cultivar Sowon clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220836 | 0.0 | KF220836.1 Glycine max cultivar Pureun clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220837 | 0.0 | KF220837.1 Glycine max cultivar Kwangkyo clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220838 | 0.0 | KF220838.1 Glycine max cultivar Ilpumgeomjeong clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220839 | 0.0 | KF220839.1 Glycine max cultivar Seoritae clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220840 | 0.0 | KF220840.1 Glycine max cultivar PI96983 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220841 | 0.0 | KF220841.1 Glycine max cultivar Haman clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220843 | 0.0 | KF220843.1 Glycine max cultivar Hwangkeum clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220844 | 0.0 | KF220844.1 Glycine soja cultivar IT162825 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220845 | 0.0 | KF220845.1 Glycine soja cultivar IT178480 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220846 | 0.0 | KF220846.1 Glycine soja cultivar IT182869 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220848 | 0.0 | KF220848.1 Glycine soja cultivar IT182848 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. | |||
GenBank | KF220849 | 0.0 | KF220849.1 Glycine soja cultivar IT182932 clone 2f5r integrase-type DNA-binding superfamily protein (Glyma01g39520) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573642.1 | 0.0 | floral homeotic protein APETALA 2 isoform X1 | ||||
Refseq | XP_028243782.1 | 0.0 | floral homeotic protein APETALA 2-like isoform X1 | ||||
Swissprot | P47927 | 1e-137 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | A0A445M5G3 | 0.0 | A0A445M5G3_GLYSO; Floral homeotic protein APETALA 2 isoform A | ||||
TrEMBL | K7K4M6 | 0.0 | K7K4M6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G39520.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3784 | 34 | 63 | Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-128 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G188400.1.p |
Entrez Gene | 100801975 |