PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G183000.1.p

Common Name

GLYMA_01G183000, LOC778100

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 337aa MW: 35634.7 Da PI: 8.5557

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G183000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.9	5.2e-39	62	121	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk+k+s Glyma.01G183000.1.p 62 ENQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKSS 121 57899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-25	62	119	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	64	120	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.432	66	120	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	68	104	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MIQELLGGAS ASLIAGERKI SITNGGGALL LTPPTSSSPS LSPSCTTSIT TSTATATSSN 60 SENQNLRCPR CDSSNTKFCY YNNYNLTQPR HFCKTCRRYW TKGGALRNVP IGGGCRKSKS 120 SGMSNSVAKQ TATKMKAVAS ELGRSSSQGL LDQELPQTPA ILWGSPQNSQ LMALLRANQN 180 HNPNPNPSPM SIVVKGEGNL MGSHHMVAEP LLANGLLNPR TSLGFDGVGE VLPSLGLCGS 240 FWRNNQDQTQ QQNNGFALGE HQSSGVQELY HKLRSSSSSI NYCGSDNSPV FLSNMASSSS 300 SLSNILESSS VSGSEFGCWN PTLSWSDLPT TNGAYP*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.22679	0.0	epicotyl\| leaf\| meristem\| pod

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G183000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT095824	0.0	BT095824.1 Soybean clone JCVI-FLGm-19N22 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003517276.1	0.0	dof zinc finger protein DOF5.1
Refseq	XP_028243087.1	0.0	dof zinc finger protein DOF5.1-like
TrEMBL	A0A445M557	0.0	A0A445M557_GLYSO; Dof zinc finger protein DOF5.7
TrEMBL	I1J936	0.0	I1J936_SOYBN; Uncharacterized protein
STRING	GLYMA01G38970.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7219	32	47
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	2e-33	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.01G183000.1.p
Entrez Gene	778100