PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G178000.1.p
Common NameGLYMA_01G178000, LOC100812095
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family BES1
Protein Properties Length: 309aa    MW: 33284.3 Da    PI: 9.6917
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G178000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822218.12e-6751491148
               DUF822   1 ggsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasasp 90 
                          g++gr ptwkErEnnkrRERrRRaiaakiy+GLRaqGnyklpk++DnneVlkALc+eAGw+ve+DGttyrkg+k++ ++e++g+  + s 
  Glyma.01G178000.1.p   5 GSTGRLPTWKERENNKRRERRRRAIAAKIYTGLRAQGNYKLPKHCDNNEVLKALCAEAGWIVEEDGTTYRKGCKRP-TSEIGGTPLNLSA 93 
                          5899************************************************************************.************* PP

               DUF822  91 esslqsslkssalaspvesysaspksssfpspssldsislasaasllpvlsvlslvss 148
                          +ss+q s++ss+ +spv+sy+asp+sssfpsp+++d ++ +  + l+p++++ +++++
  Glyma.01G178000.1.p  94 CSSIQASPQSSSYPSPVPSYHASPTSSSFPSPTRIDGNHPS--SFLIPFIRNITSIPA 149
                          *************************************9887..788898888877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056873.9E-637130IPR008540BES1/BZR1 plant transcription factor, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009741Biological Processresponse to brassinosteroid
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTGGGSTGRL PTWKERENNK RRERRRRAIA AKIYTGLRAQ GNYKLPKHCD NNEVLKALCA  60
EAGWIVEEDG TTYRKGCKRP TSEIGGTPLN LSACSSIQAS PQSSSYPSPV PSYHASPTSS  120
SFPSPTRIDG NHPSSFLIPF IRNITSIPAN LPPLRISNSA PVTPPLSSPR SSKRKADFDS  180
LRHPLFATSA PSSPTRRHHV ATSTIPECDE SDASTVDSAS GRWVSFQVQT TMVAAAAAAP  240
PSPTFNLMKP AMQQIAAQEG MQWGSVAERG RGGSDFDFEN GRVKPWEGER IHEVGMDDLE  300
LTLGVGKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-28987372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-28987372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-28987372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-28987372450Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.14230.0cotyledon| hypocotyl| leaf| somatic embryo| stem
Function -- GeneRIF ? help Back to Top
  1. Results suggest that GmBEHL1 functions as a co-repressor to negatively regulate soybean nodulation; moreover, they reveal for the first time direct crosstalk between the nodulation factor and brassinosteroid signaling pathways in soybean.
    [PMID: 29769571]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G178000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF5337010.0EF533701.1 Glycine max clone BAC GM_WBb095P01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352105.10.0BES1/BZR1 family protein
RefseqXP_028242469.10.0BES1/BZR1 homolog protein 2-like
SwissprotQ94A431e-106BEH2_ARATH; BES1/BZR1 homolog protein 2
TrEMBLA0A445M4K20.0A0A445M4K2_GLYSO; BES1/BZR1-like protein 2
TrEMBLI1J8Y40.0I1J8Y4_SOYBN; Uncharacterized protein
STRINGGLYMA01G38450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127534105
Representative plantOGRP37191024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75080.23e-76BES1 family protein
Publications ? help Back to Top
  1. Yan Q,Wang L,Li X
    GmBEHL1, a BES1/BZR1 family protein, negatively regulates soybean nodulation.
    Sci Rep, 2018. 8(1): p. 7614
    [PMID:29769571]