PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G177500.1.p
Common NameGlyma01g38390.1, LOC100809616
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25074.2 Da    PI: 6.6943
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G177500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.4e-2056110357
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                          k+++++++q++ Le+ F +++++  e++ +LA++lgL+ rqV vWFqNrRa++k+
  Glyma.01G177500.1.p  56 KKRKLSDDQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKN 110
                          56799************************************************95 PP
2HD-ZIP_I/II117.47.8e-3855147193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          +kkr+ls++qv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+ Lk++++a   e++rLe+ev +L+e+
  Glyma.01G177500.1.p  55 NKKRKLSDDQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKNHEATLLEKCRLETEVLKLKEQ 144
                          59**************************************************************************************** PP

          HD-ZIP_I/II  91 lke 93 
                          l+e
  Glyma.01G177500.1.p 145 LSE 147
                          986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.24851111IPR001356Homeobox domain
SMARTSM003894.4E-1854115IPR001356Homeobox domain
SuperFamilySSF466892.18E-1855120IPR009057Homeodomain-like
PfamPF000463.4E-1756110IPR001356Homeobox domain
CDDcd000861.07E-1556112No hitNo description
Gene3DG3DSA:1.10.10.605.5E-2158118IPR009057Homeodomain-like
PRINTSPR000312.3E-58291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000312.3E-591107IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNHRQPFQDH MMLMSQLLPA DAYTQIIAQQ GDTKKPRRRR NKKNKGGENA ASEANKKRKL  60
SDDQVNLLEQ NFGNEHKLES ERKDRLAMEL GLDPRQVAVW FQNRRARWKN KKLEEEYSNL  120
KKNHEATLLE KCRLETEVLK LKEQLSEAEK EIQRLLESAE RVPSNSSSSS QSQSMEAVDP  180
PFFGEFGVDG YEDDVFYVPE IHYINGMEWI NLYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13758RRRNKKNKGGENAASEANKKRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.615290.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, flowers and siliques. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G177500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311620.0KT031162.1 Glycine max clone HN_CCL_116 homeodomain/HOMEOBOX transcription factor (Glyma01g38390.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517245.11e-159homeobox-leucine zipper protein ATHB-40
RefseqXP_028242426.11e-159homeobox-leucine zipper protein ATHB-40-like
SwissprotO232086e-72ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0K2CTJ31e-158A0A0K2CTJ3_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBLA0A445M4R91e-158A0A445M4R9_GLYSO; Homeobox-leucine zipper protein ATHB-40 isoform A
TrEMBLI1J8X81e-158I1J8X8_SOYBN; Uncharacterized protein
STRINGGLYMA01G38390.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47893257
Representative plantOGRP37761025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.18e-65homeobox protein 40
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]
  2. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]