PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G177200.1.p
Common NameGLYMA_01G177200, LOC100807470
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 526aa    MW: 58688.6 Da    PI: 5.5531
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G177200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS276.76.9e-851685242374
                 GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          +e L+++A+++++++l+ aq +L+rl+++ +sp g+p++R+a+y++eAL++ l++      +  +p+ +s  + ++++  +k+fs +sPi
  Glyma.01G177200.1.p 168 IEELIRAADCFDTKQLHVAQLILERLNQRlRSPVGKPLHRAAFYLKEALQSLLSG------SNRTPRISSLVEIVHSIRTFKAFSGISPI 251
                          679*************************99*************************......5556666666678888999999******* PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          + fs +t+Nq +l+ ++ ++ +H+iDfdi+ G+Q+++L++++a++++++p lRiT+v+++e   + e   ++++La+fA  l+++++ ++
  Glyma.01G177200.1.p 252 PMFSIFTTNQIVLDHAA-SSFMHVIDFDIGLGIQYASLMKEIAEKAADSPVLRITAVVPEE--YAVESTLVRDNLAQFALDLRIRVQVEF 338
                          **************976.5799*************************************66..8999999******************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe.....adhnsesFlerflealeyys 265
                          +  +++e+l++++ ++ +gE++aV l+ +++r l   ++ +    ++L  v+++sP vvv+v+ e     a  +++sF ++++++leyys
  Glyma.01G177200.1.p 339 VPLRTFENLSFKAVKFVNGENTAVLLSPAIFRHL---GNAA----AFLADVRRISPSVVVFVDGEgwaetATASAASFRRGVVSSLEYYS 421
                          9999*****************************9...4444....5*****************9976553444777************** PP

                 GRAS 266 alfdsl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                          ++++sl +++++   e+ + +E + l+++i  +v  + +       ++  Wre++  aG++pv+ls++a  qa++ll+k + +g++v ++
  Glyma.01G177200.1.p 422 MMLESLdASTVGGGGEWVRRIEMMQLRPKILAAVESAWR-------RVPPWREAFYGAGMRPVQLSQFADFQAECLLAKSQIRGFHVAKR 504
                          ******778889999***************999866555.......489***************************************** PP

                 GRAS 355 sgslvlgWkdrpLvsvSaWr 374
                          +++lvl W+dr++v++SaWr
  Glyma.01G177200.1.p 505 QNELVLFWHDRAIVATSAWR 524
                          *******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098532.824141504IPR005202Transcription factor GRAS
PfamPF035142.4E-82168524IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MRVPVPSSPQ ANPKPTNNVV RTIALPNLNN STTPPTGLCY EPTSVLDLCR SPSPGTEKPT  60
TDHSVLVTNS QDYLDLEDHA LHNLDWDSIM KDLGLHDDSA TPVLKTFLHP DDDDDDDNNN  120
NPSCDDFTLF DHALEFTTLS DIYSNQNFAF DFNHLPHDFN HLNGFDFIEE LIRAADCFDT  180
KQLHVAQLIL ERLNQRLRSP VGKPLHRAAF YLKEALQSLL SGSNRTPRIS SLVEIVHSIR  240
TFKAFSGISP IPMFSIFTTN QIVLDHAASS FMHVIDFDIG LGIQYASLMK EIAEKAADSP  300
VLRITAVVPE EYAVESTLVR DNLAQFALDL RIRVQVEFVP LRTFENLSFK AVKFVNGENT  360
AVLLSPAIFR HLGNAAAFLA DVRRISPSVV VFVDGEGWAE TATASAASFR RGVVSSLEYY  420
SMMLESLDAS TVGGGGEWVR RIEMMQLRPK ILAAVESAWR RVPPWREAFY GAGMRPVQLS  480
QFADFQAECL LAKSQIRGFH VAKRQNELVL FWHDRAIVAT SAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2217352325378Protein SCARECROW
5b3h_A3e-2217352324377Protein SCARECROW
5b3h_D3e-2217352324377Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.589930.0seed coat| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and flowers. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G177200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354170.0AC235417.1 Glycine max strain Williams 82 clone GM_WBb0135A07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517241.10.0scarecrow-like protein 15
SwissprotO232101e-163SCL15_ARATH; Scarecrow-like protein 15
TrEMBLI1J8X50.0I1J8X5_SOYBN; Uncharacterized protein
STRINGGLYMA01G38360.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Representative plantOGRP10323610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-166GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]