PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G176100.1.p | ||||||||
Common Name | GLYMA_01G176100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 108aa MW: 12114.7 Da PI: 5.176 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.3e-08 | 26 | 70 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +rWTte +l+ +a + + ++ +W+ Ia +g g t+ ++k + Glyma.01G176100.1.p 26 LRWTTEKNKLFENALAIYDKDtpeRWNNIAMFVG-GTTEVEVKRQY 70 79********************************.********877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.0E-4 | 24 | 76 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.1E-11 | 27 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.55E-6 | 27 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 108 aa Download sequence Send to blast |
MSTEFSLCSN LKAMTSYTLS SPNTSLRWTT EKNKLFENAL AIYDKDTPER WNNIAMFVGG 60 TTEVEVKRQY EILLEDIKNI ESGKVPLPDY TRNAGCGKLN ISSAEQR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 6e-26 | 28 | 107 | 11 | 86 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G176100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP007301 | 2e-88 | AP007301.1 Lotus japonicus genomic DNA, chromosome 2, clone: LjT20E01, TM0549, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573585.1 | 5e-75 | transcription factor RADIALIS | ||||
Refseq | XP_028242318.1 | 5e-75 | transcription factor RADIALIS-like | ||||
Swissprot | F4JVB8 | 1e-27 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A445M4N8 | 1e-73 | A0A445M4N8_GLYSO; Protein RADIALIS-like 1 | ||||
TrEMBL | K7K4F2 | 1e-73 | K7K4F2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G38250.2 | 2e-74 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 5e-30 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G176100.1.p |
Publications ? help Back to Top | |||
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