PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G173900.1.p
Common NameGLYMA_01G173900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 70aa    MW: 8104.16 Da    PI: 9.0639
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G173900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.71.1e-07446344
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                         +WT+   +l+ +a + +  +   +W  +ar +g  ++ +++k ++
  Glyma.01G173900.1.p  4 SWTPRQNKLFEEALAIHDREtpdRWQNVARVVG--KSVEDVKRHY 46
                         7*****************88************8..9********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129313.406154IPR017884SANT domain
SMARTSM007172.3E-6152IPR001005SANT/Myb domain
SuperFamilySSF466895.78E-12357IPR009057Homeodomain-like
CDDcd001673.52E-5450No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MASSWTPRQN KLFEEALAIH DRETPDRWQN VARVVGKSVE DVKRHYEILK EDIKRIERGQ  60
IPLPNYTGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-245661173RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G173900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT4857982e-49CT485798.2 Medicago truncatula chromosome 5 clone mth2-24d7, COMPLETE SEQUENCE.
GenBankCU1376612e-49CU137661.2 Medicago truncatula chromosome 5 clone mth4-96g16, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007156953.12e-41hypothetical protein PHAVU_002G031300g
SwissprotQ1A1736e-26RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLK7K4D13e-44K7K4D1_SOYBN; Uncharacterized protein
STRINGGLYMA01G37961.16e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-28RAD-like 6