PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G170700.1.p

Common Name

GLYMA_01G170700, LOC100814589

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

SRS

Protein Properties

Length: 317aa MW: 34290.8 Da PI: 6.5009

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G170700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	213.8	4.1e-66	103	256	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaassk..aaasaaeaaskrkrelkskkqsalsstk 90 g++sCqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpa++rrer qq +a++++ +s + +kr+re ++ +s l++t+ Glyma.01G170700.1.p 103 GGGISCQDCGNQAKKDCPHMRCRTCCKSRGFDCQTHVKSTWVPASRRRERLQQFSALQQTlePPSSGGGDLPKRHRERDHHYHSPLACTR 192 5789********************************************999888876511445558999***99****** PP DUF702 91 lssaeskkeletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGle 153 +s+ ++ le ++P+ v+s+a frcvrvss+d+ +eee+aY tav+i+GhvfkGiLyd+G+e Glyma.01G170700.1.p 193 FPSNPLSSGLEEVNFPALVRSDAEFRCVRVSSMDEeAEEEYAYSTAVNIAGHVFKGILYDYGPE 256 ******************************967889********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.6E-62	105	256	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.3E-28	107	149	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.1E-23	207	255	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 317 aa Download sequence Send to blast
MAGLFSLGGG SSSRGNTQQE EIPPPDTLFW YNNKNDDVSS YHRGGGFELW NQQQLMGQGP 60 PSQQRPLFHQ DLYSALGVGP SRPISDDQSS SRSGFMLGST GGGGGISCQD CGNQAKKDCP 120 HMRCRTCCKS RGFDCQTHVK STWVPASRRR ERLQQFSALQ QTLEPPSSGG GDLPKRHRER 180 DHHYHSPLAC TRFPSNPLSS GLEEVNFPAL VRSDAEFRCV RVSSMDEEAE EEYAYSTAVN 240 IAGHVFKGIL YDYGPEGNTN YMAGAGESSS TGVGALNLTT GAIVSEPIVD PSSLYTAPLN 300 TFIPGSGTQF FPHPRS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.25152	1e-176	flower\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: In germinating seeds, first detected at about 48 h after imbibition. In young seedlings grown in continuous light, present in the root/shoot transition zone, in the apex, and in the apical region of the cotyledons. Later observed in lateral root primordia and in emerging lateral roots, particularly in the root tips, as well as in the shoot apex and in the new leaves, especially in the apical and lateral hydathodes. In adult plants, accumulates in lateral root tips, lateral root primordia, and axillary shoot primordia. In flowers, expressed in the style and stigmatic surface of the pistil and in the receptacle (base) of the flower throughout the development of the pistil until anthesis and later in the silique. Fades out after fertilization. {ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.
Uniprot	TISSUE SPECIFICITY: Expressed in young organs such as shoot apices and root tips. Present in roots, stems, flowers, leaves, hydathodes and siliques. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G170700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ571602	0.0	FJ571602.1 Glycine max clone GM_WBa0048N22, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003516559.1	0.0	protein SHI RELATED SEQUENCE 1 isoform X1
Swissprot	Q9XGX0	2e-73	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	K7K4B8	0.0	K7K4B8_SOYBN; Uncharacterized protein
STRING	GLYMA01G37590.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125
Representative plant	OGRP1872	11	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-65	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Glyma.01G170700.1.p
Entrez Gene	100814589

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]