PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G169600.2.p | ||||||||
Common Name | GLYMA_01G169600, LOC100784496 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 243aa MW: 27895.1 Da PI: 9.7049 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 94 | 6.7e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien +nrqvt+skRrngi+KKA+ELSvLCda+v++i+fs+++k++ey+s Glyma.01G169600.2.p 9 KLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYIS 59 569**********************************************86 PP | |||||||
2 | K-box | 68.1 | 2.9e-23 | 76 | 172 | 6 | 99 |
K-box 6 gks.leeakaeslqqelakLkkeienLqreqRhllGedL..esLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 g l+++++e++ ++l+kLk+ +++L+r++Rh++Ge+L +++s+++L+ Le+++ +s+ kiR++K +++++ +++ +kk k+l++ n Glyma.01G169600.2.p 76 GDIdLWHSHYEKMLENLKKLKDINNKLRRQIRHRIGEGLdmDDMSFQQLRTLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVKSLKQMNG 165 43359********************************763369*********************************************** PP K-box 93 aLrkkle 99 +L +le Glyma.01G169600.2.p 166 NLLLELE 172 9987765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.497 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.8E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.86E-38 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 2.88E-35 | 2 | 96 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.7E-25 | 11 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.9E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-18 | 82 | 170 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.802 | 85 | 177 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MGRGKIEIKL IENPTNRQVT YSKRRNGIFK KAHELSVLCD AKVSLIMFSK NNKMHEYISP 60 GLTTKKIIDQ YQKTLGDIDL WHSHYEKMLE NLKKLKDINN KLRRQIRHRI GEGLDMDDMS 120 FQQLRTLEED MVSSIGKIRE RKFHVIKTRT DTCRKKVKSL KQMNGNLLLE LEKCVIHPQF 180 LLHDEGDEES AAAAAAAAVA LANGASTLYA FCHQHHSHLN LFSHHSNGEE QPFKTDHDLR 240 LA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_B | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_C | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6byy_D | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_A | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_B | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_C | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
6bz1_D | 1e-15 | 1 | 62 | 1 | 62 | MEF2 CHIMERA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.41186 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens, petals and carpels (PubMed:17920788). Expressed in fruits and seeds (PubMed:17920788). {ECO:0000269|PubMed:17920788}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G169600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT094283 | 0.0 | BT094283.1 Soybean clone JCVI-FLGm-14H3 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006572851.1 | 0.0 | uncharacterized protein LOC100784496 isoform X1 | ||||
Swissprot | Q003J2 | 1e-96 | TM6_VITVI; Agamous-like MADS-box protein TM6 | ||||
TrEMBL | K7K4A6 | 1e-180 | K7K4A6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G37470.1 | 1e-166 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-60 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G169600.2.p |
Entrez Gene | 100784496 |
Publications ? help Back to Top | |||
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