PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G168500.5.p | ||||||||
Common Name | GLYMA_01G168500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 203aa MW: 22268.5 Da PI: 6.8989 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.4 | 1.1e-06 | 4 | 30 | 5 | 31 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCll 31 C+ +e+ ++ fC ++ lC+ C + Glyma.01G168500.5.p 4 LCDACESAAAIVFCAADEAALCRACDE 30 7************************87 PP | |||||||
2 | zf-B_box | 30.7 | 6.7e-10 | 70 | 109 | 2 | 37 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37 + ++C+ +e+ ++ ++Ce++++ lC +C + H g H Glyma.01G168500.5.p 70 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 109 5799**************************9995544455 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 0.17 | 1 | 65 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.873 | 1 | 30 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.53E-4 | 3 | 32 | No hit | No description |
SuperFamily | SSF57845 | 8.61E-6 | 66 | 104 | No hit | No description |
PROSITE profile | PS50119 | 9.158 | 69 | 114 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 2.1E-11 | 69 | 114 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.1E-7 | 70 | 103 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.89E-7 | 72 | 102 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MRTLCDACES AAAIVFCAAD EAALCRACDE KVDPCSFIDV LRSDLIFFAV HMCNKLASRH 60 VRVGLASPSD VPRCDICENA PAFFYCETDG SSLCLQCDMI VHVGGKRTHG RYLLFRQRVE 120 FPGDKSSHAE NPASQPLEPG EAKRGQNPLP KLKMGEKQQN HKMPMVPTPG PDADGHAKME 180 SKMIDLNMKP NRIHEQASNN QP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.3546 | 0.0 | cotyledon| epicotyl| flower| hypocotyl| leaf| pod| root| somatic embryo| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G168500.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT095448 | 0.0 | BT095448.1 Soybean clone JCVI-FLGm-19K10 unknown mRNA. | |||
GenBank | BT098772 | 0.0 | BT098772.1 Soybean clone JCVI-FLGm-12P20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517191.1 | 1e-131 | B-box zinc finger protein 18 | ||||
Refseq | XP_028241683.1 | 1e-131 | B-box zinc finger protein 18-like | ||||
Swissprot | C0SVM5 | 1e-68 | BBX19_ARATH; B-box zinc finger protein 19 | ||||
TrEMBL | A0A0R0LHC2 | 1e-148 | A0A0R0LHC2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G37370.1 | 1e-130 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38960.1 | 4e-71 | DBB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G168500.5.p |