PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.01G159200.1.p

Common Name

GLYMA_01G159200

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 327aa MW: 37490.6 Da PI: 7.0002

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.01G159200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	84.1	1.3e-26	199	248	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ++isl+dl kyF +pi +A+++L+v+lTvLKr+CR++GI+RWPhRkiksl Glyma.01G159200.1.p 199 AKISLSDLVKYFGMPIVEASRNLNVGLTVLKRKCREFGIPRWPHRKIKSL 248 589*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	19.645	183	268	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-21	201	248	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MESTLLTNLL VFNNTLQPEL MRSVHVYRRG DGEKREVERE FVFSESGSYG EMQATPIPGL 60 VKSRVSEVCE GHRNGVWLCV FAFHADHTPQ FCRIPPVLLV TRNPKLKMIP NLLDDLHVIY 120 KLDRKEEDSD IAQDYTGEER QGNSNNCQPS WKVFPVLDQD LNCLPYEDDE SESLDNETDV 180 ESSPGLLAKK KRAPSDLVAK ISLSDLVKYF GMPIVEASRN LNVGLTVLKR KCREFGIPRW 240 PHRKIKSLDS LIHDLQEEVK SQELEDREAA LAVAKRQRML ESEKENIEKK PFMDIQSETK 300 RFRQDVFKRR HRARAVGKHN STVSST*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.28927	0.0	cotyledon\| seed coat\| somatic embryo

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.01G159200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT090377	0.0	BT090377.1 Soybean clone JCVI-FLGm-4G14 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025984335.1	0.0	protein RKD5-like
Refseq	XP_028240683.1	0.0	protein RKD5-like
TrEMBL	A0A445M3R7	0.0	A0A445M3R7_GLYSO; Protein RKD5
TrEMBL	I1J8D1	0.0	I1J8D1_SOYBN; Uncharacterized protein
STRING	GLYMA01G36360.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9646	30	42
Representative plant	OGRP567	17	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	1e-85	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Glyma.01G159200.1.p