PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G148600.1.p | ||||||||
Common Name | GLYMA_01G148600, LOC100809947 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GRF | ||||||||
Protein Properties | Length: 336aa MW: 36936.2 Da PI: 9.2841 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 69.1 | 5.5e-22 | 67 | 111 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++ +++k+C+rH+ r r rsrk++e+ Glyma.01G148600.1.p 67 DPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVES 111 79****************************************997 PP | |||||||
2 | QLQ | 57.7 | 3.4e-20 | 14 | 49 | 2 | 37 |
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FTaaQ+++L++Q+l++KyL a++ vPp+Ll++i+k Glyma.01G148600.1.p 14 PFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRK 49 9*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.5E-12 | 13 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 23.693 | 14 | 49 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.6E-15 | 14 | 48 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.698 | 67 | 111 | IPR014977 | WRC domain |
Pfam | PF08879 | 9.0E-19 | 68 | 110 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 336 aa Download sequence Send to blast |
MSVPPPYAAA MWTPFTAAQW HELEHQALIF KYLKAGLSVP PDLLLPIRKS LQLMSHPSLG 60 FYGKKIDPEP GRCRRTDGKK WRCSRDAHPD SKYCDRHMIR RRYRSRKPVE SSQTHSSSSS 120 SSSSSATAAS SNSNPVAGGG GGSVANVSGT ATAAKTLHTL PLHTNGAREG FTFTLGNNTN 180 TTLPHLHMNP LTLSADNTKK TYRFGLNSEA DEHNVLQKDL GSVRYQGYDF TSDAMWSQMS 240 HIPSNTVSES RSGSTMLGNC FQHQTMRDAE LLNLETARTK DLVFSGQLSS AGGLKQEYQS 300 PQSLFSDWDW KKDLSSSALE YKPNKDFNCN PDANV* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20100 | 0.0 | seed coat| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G148600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-152 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516492.1 | 0.0 | growth-regulating factor 3 | ||||
Refseq | XP_028239299.1 | 0.0 | growth-regulating factor 3-like | ||||
TrEMBL | A0A445M348 | 0.0 | A0A445M348_GLYSO; Growth-regulating factor 3 | ||||
TrEMBL | K7K3Y3 | 0.0 | K7K3Y3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G35145.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF14948 | 11 | 12 | Representative plant | OGRP460 | 16 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13960.1 | 9e-39 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G148600.1.p |
Entrez Gene | 100809947 |