PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G143900.1.p | ||||||||
Common Name | GLYMA_01G143900, LOC100798425 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 248aa MW: 25867.4 Da PI: 7.752 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 128.7 | 2.6e-40 | 26 | 126 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C aCk+lrrkC ++C++apyf +e+ + +fa+vhk+FGasn++kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+++ Glyma.01G143900.1.p 26 PCGACKFLRRKCMPGCIFAPYFDSEEgATHFAAVHKVFGASNISKLLLNIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVMS 115 7*********************998879************************************************************** PP DUF260 90 lkaelallkee 100 l+ael++l+ + Glyma.01G143900.1.p 116 LQAELSYLQGH 126 ******99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.263 | 25 | 127 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 7.1E-40 | 26 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MSINSSCSIS GGSSSGGNNN SSGGSPCGAC KFLRRKCMPG CIFAPYFDSE EGATHFAAVH 60 KVFGASNISK LLLNIPVHKR LDAVVTICYE AQARLRDPVY GCVAHIFALQ QQVMSLQAEL 120 SYLQGHLATL ELPQPPPPSS PQATTMAPPP LISIAEFIPS SALASSTVPP TYDLSSLFDP 180 MAQTPSWAVQ PRPIESRQYV GSGPSGPSAT IASGGDLQAL ARELLHRHGS APVVACSNPS 240 SSYPISK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-39 | 24 | 121 | 9 | 105 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-39 | 24 | 121 | 9 | 105 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.62714 | 0.0 | root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During lateral root formation, expressed in the lateral root primordia, and the developing, emerged, and mature lateral roots. {ECO:0000269|PubMed:19717544}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116, PubMed:24484953). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:24484953}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G143900.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235410 | 1e-111 | AC235410.1 Glycine max strain Williams 82 clone GM_WBb0128C24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001340875.1 | 1e-180 | LBD domain-containing transcription factor | ||||
Refseq | XP_028238649.1 | 1e-180 | LOB domain-containing protein 18-like | ||||
Swissprot | O22131 | 2e-77 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | A0A0B2S791 | 1e-178 | A0A0B2S791_GLYSO; LOB domain-containing protein 18 | ||||
TrEMBL | I1J7Y2 | 1e-178 | I1J7Y2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G34540.1 | 1e-179 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 | Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 9e-79 | LOB domain-containing protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G143900.1.p |
Entrez Gene | 100798425 |
Publications ? help Back to Top | |||
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