PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G113300.1.p | ||||||||
Common Name | GLYMA_01G113300, LOC102668301 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 17537 Da PI: 10.5377 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.3 | 6.3e-06 | 71 | 93 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Glyma.01G113300.1.p 71 FICEICNKGFQRDQNLQLHRRGH 93 89*******************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.93E-5 | 69 | 94 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.1E-6 | 70 | 93 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 1.2E-5 | 71 | 93 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE profile | PS50157 | 10.845 | 71 | 93 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 73 | 93 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MSNLTSTFAE ARASSDNRTE IGTDYSQQYF TPPQTQTQPP LKKKRNLSAN PDPKAEVVSL 60 SPKTLLASNR FICEICNKGF QRDQNLQLHR RGHNLPWKLN QRSSKEIIRK KVYVCPEASC 120 MHHEPSRALG DLTGIKKHFC RKHGQKKWKY DK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.13626 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G113300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006574156.1 | 1e-112 | protein indeterminate-domain 11 | ||||
Swissprot | Q9LRW7 | 7e-71 | IDD11_ARATH; Protein indeterminate-domain 11 | ||||
TrEMBL | A0A0R0L980 | 1e-111 | A0A0R0L980_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G27910.1 | 1e-107 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF181 | 34 | 275 | Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13810.1 | 4e-71 | indeterminate(ID)-domain 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G113300.1.p |
Entrez Gene | 102668301 |
Publications ? help Back to Top | |||
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