PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G107500.1.p
Common NameGLYMA_01G107500, LOC100811740
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 351aa    MW: 37849.4 Da    PI: 6.137
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G107500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-163378147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +g+W++eEd +l ++v ++G ++W++Iar +  gR++k+c++rw + 
  Glyma.01G107500.1.p 33 KGPWSPEEDAILSRLVGKFGARNWSLIARGIS-GRSGKSCRLRWCNQ 78
                         79******************************.***********985 PP
2Myb_DNA-binding56.75.5e-1885129147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r+++T eEd  +v a++ +G++ W++Iar ++ gRt++ +k++w++ 
  Glyma.01G107500.1.p  85 RKPFTDEEDRMIVAAHAIHGNK-WAAIARLLP-GRTDNAIKNHWNST 129
                          789*******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.9912879IPR017930Myb domain
SuperFamilySSF466891.73E-3030126IPR009057Homeodomain-like
SMARTSM007172.4E-143281IPR001005SANT/Myb domain
PfamPF002491.0E-153378IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-253486IPR009057Homeodomain-like
CDDcd001676.85E-143577No hitNo description
PROSITE profilePS5129425.63280134IPR017930Myb domain
SMARTSM007173.1E-1784132IPR001005SANT/Myb domain
PfamPF002494.0E-1585129IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.8E-2487133IPR009057Homeodomain-like
CDDcd001673.32E-1387130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MEPEETAAAA DGSFDEGLLG LDDGGGGGRD RVKGPWSPEE DAILSRLVGK FGARNWSLIA  60
RGISGRSGKS CRLRWCNQLD PAVKRKPFTD EEDRMIVAAH AIHGNKWAAI ARLLPGRTDN  120
AIKNHWNSTL RRRGVGHDTI KLESVSFMED VSLEKAKASS EDTLSCGDVS LKSSEGRDVS  180
SMEIMDDKSD DKAQTEGQIH HEVKDLPTLF RPVARVSAFN VYHSFDGTQP STSIKRPVPM  240
QGAVLQSSKP DMEFCRMLEG ICGDQSVPHQ CGHGCCAAPD GRKSESSLLG PEFVEFSEPP  300
SFPNFELAAI ATDISNLAWL KSGLESSSAK MMGNTSGRVV SNGSQVHIGH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-41301334107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.298730.0somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G107500.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003516915.10.0transcription factor MYB1
RefseqXP_028235689.10.0transcription factor MYB1-like
SwissprotQ425751e-107MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A445M1G20.0A0A445M1G2_GLYSO; Transcription factor MYB1
TrEMBLI1J7380.0I1J738_SOYBN; Uncharacterized protein
STRINGGLYMA01G26650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-107myb domain protein 1
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]