PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G101400.1.p | ||||||||
Common Name | GLYMA_01G101400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 109aa MW: 12716.5 Da PI: 10.683 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.1 | 2.7e-15 | 54 | 98 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g T++E+ ++++++ ++G++ W+tIar ++ gR ++++k++w+++ Glyma.01G101400.1.p 54 KGQITPQEESIILQLHVRWGNR-WSTIARSLP-GRIDNEIKNYWRTH 98 5778******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.59E-15 | 45 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-23 | 45 | 103 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 23.647 | 49 | 103 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-12 | 53 | 101 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-13 | 54 | 98 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.94E-8 | 58 | 99 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MAGNMGWGVI EEEGWRKGPS TSEEDILYVK FHGEGRWNSA ARLAVNYLRP DLKKGQITPQ 60 EESIILQLHV RWGNRWSTIA RSLPGRIDNE IKNYWRTHFK KKIRAHFR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 9e-17 | 17 | 103 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mainly expressed in leaves and seedlings, and to a lower extent, in roots, stems and inflorescences. Isoform MYB48-1, isoform MYB48-3 and isoform MYB48-4 are present in all of these organs, but isoform MYB48-2 is confined to leaves. {ECO:0000269|PubMed:16531467}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G101400.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:16463103}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097047 | 6e-76 | BT097047.1 Soybean clone JCVI-FLGm-15J22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014632633.1 | 7e-65 | myb-related protein 305 | ||||
Swissprot | Q9LX82 | 2e-33 | MYB48_ARATH; Transcription factor MYB48 | ||||
TrEMBL | K7K2Z5 | 5e-74 | K7K2Z5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G24771.1 | 8e-75 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24310.1 | 2e-49 | myb domain protein 305 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G101400.1.p |
Publications ? help Back to Top | |||
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