PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G088300.4.p
Common NameGLYMA_01G088300, LOC100779653
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 377aa    MW: 41667.8 Da    PI: 6.9639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G088300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH443.9e-14181227354
                          HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          ++h+e+ErrRR+riN+ +++Lr+llP+      +K +Ka+ L ++++++k+L
  Glyma.01G088300.4.p 181 KSHSEAERRRRERINNHLAKLRSLLPNT-----TKTDKASLLAEVIQHVKEL 227
                          79*************************9.....8****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.136178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-11181227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.9E-15182236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-15182234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-13184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.76E-5191230No hitNo description
CDDcd048731.09E-5263314No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MKKELEDQGQ CSSLPIDTKN NIQSYQEHLL QQQMQQNSDI FGGGASRGLM FPPEVSPTLQ  60
QQSWSMPPVH SFNSNPVHYI NNNNTNPVHH HHEQAPFLVP PPTTPSPYAS FFSSRRVVPS  120
LQFAYEGPSS HLDHHHHLRI ISDTLGPMVQ PGSAAPFGLQ AELGKMTAQE IMEAKALAAS  180
KSHSEAERRR RERINNHLAK LRSLLPNTTK TDKASLLAEV IQHVKELKRQ TSLIAETSPV  240
PTESDELTVD AVDEDGKFVI KASLCCEDRS DLLPDLIKTL KALRLRTLKA EITSLGGRVK  300
NVLVITGDED NSNSNTHNGE QSMQQQQQQF CISSIQEALK AVMEKSGGGD ESASGNVKRQ  360
RTTTNNNINI LEQRSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G088300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573268.10.0transcription factor bHLH30
RefseqXP_006573269.10.0transcription factor bHLH30
RefseqXP_028234163.10.0transcription factor bHLH30-like
RefseqXP_028234164.10.0transcription factor bHLH30-like
SwissprotQ9S7Y11e-111BH030_ARATH; Transcription factor bHLH30
TrEMBLA0A0B2QVZ40.0A0A0B2QVZ4_GLYSO; Transcription factor bHLH30
TrEMBLK7K2S10.0K7K2S1_SOYBN; Uncharacterized protein
STRINGGLYMA01G22530.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-84bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ohashi-Ito K, et al.
    A bHLH complex activates vascular cell division via cytokinin action in root apical meristem.
    Curr. Biol., 2014. 24(17): p. 2053-8
    [PMID:25131670]
  3. Katayama H, et al.
    A Negative Feedback Loop Controlling bHLH Complexes Is Involved in Vascular Cell Division and Differentiation in the Root Apical Meristem.
    Curr. Biol., 2015. 25(23): p. 3144-50
    [PMID:26616019]