PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G086800.1.p
Common NameGLYMA_01G086800, LOC100791558
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 333aa    MW: 37167.2 Da    PI: 7.4482
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G086800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.55e-05156175120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++C+ C+k+F+r  n++ H+
  Glyma.01G086800.1.p 156 FSCTVCNKMFNRFNNMQMHM 175
                          89*****************9 PP
2zf-C2H213.70.00018241263123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C +Cgk+F  + + ++H +++
  Glyma.01G086800.1.p 241 FGCRKCGKPFAVRGDWRTHEKNC 263
                          56*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.88E-5152177No hitNo description
PROSITE profilePS501579.889156183IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-5156175IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280158178IPR007087Zinc finger, C2H2
SuperFamilySSF576671.53E-5224261No hitNo description
Gene3DG3DSA:3.30.160.607.8E-5227261IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQAHHPFSYI SSCPGSSTSA FLEPHHHHHH EVVDEASISL SLGPPGQQQH KNHYQATTSS  60
SSHHPSSILH HHYQQNPSTT TATTSDDHHH QRGGVTVALH IGLPSPTTTT SSTNSATTPT  120
TTSKLPDLHL ASAAPNIQGQ YWIPSPAQIL IGPTQFSCTV CNKMFNRFNN MQMHMWGHGS  180
QYRKGPESLR GAKPASSMLR LPCYCCAEGC KNNIEHPRSR PLKDFRTLQT HYKRKHGAKP  240
FGCRKCGKPF AVRGDWRTHE KNCGRLWFCI CGSDFKHKRS LKDHVRAFGD GHAPHTVESC  300
DRVGEDEDDE ELEVEDEEEE DYHSNDLVFG FN*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269|PubMed:18643975, ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G086800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150432e-44AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006573265.10.0zinc finger protein WIP6
RefseqXP_028234121.10.0zinc finger protein WIP6-like
SwissprotQ9FX681e-117ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBLA0A0B2S7080.0A0A0B2S708_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBLK7K2R10.0K7K2R1_SOYBN; Uncharacterized protein
STRINGGLYMA01G22120.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13290.11e-112C2H2-like zinc finger protein