PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G075800.1.p | ||||||||
Common Name | GLYMA_01G075800, LOC100806582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 345aa MW: 37647.8 Da PI: 9.202 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129 | 1.8e-40 | 178 | 255 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC+ l +ak+yhrrhkvCe+hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Glyma.01G075800.1.p 178 RCQVEGCHLALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVSEFDNSKRSCRRRLAGHNERRRKSSH 255 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-34 | 175 | 240 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.129 | 176 | 253 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 2.35E-38 | 177 | 258 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.7E-32 | 179 | 252 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MEFGGNMFCL NNRDQNGNTN NNGNTFAWDS WETPANSSNN NNNNNTSSRL VNAFHLPAAS 60 RVAEADGSVP ATRHEAAGLA SALMFLPQNG GGMRHRQQQQ HPYGGDGSHV HPDPHLMCLK 120 LGKRHYFEDT SGSGSGSVAA AATLGGGLVL GDKRGKGYSS GGGASVKAAG LTAVTVPRCQ 180 VEGCHLALLN AKDYHRRHKV CEMHSKAPKV VVLGMEQRFC QQCSRFHVVS EFDNSKRSCR 240 RRLAGHNERR RKSSHDSVAR NSSKGGCALS LLSSRSDSWL SPSDLSIRCS AALRELIAEN 300 RAAIMARQFV SDRDWHNHHH AVEDFKEIQP ESNYFPQQMF PQTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-29 | 179 | 252 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young panicles. {ECO:0000269|PubMed:16861571}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G075800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517942.1 | 0.0 | squamosa promoter-binding-like protein 7 isoform X1 | ||||
Refseq | XP_028232895.1 | 0.0 | squamosa promoter-binding-like protein 7 isoform X1 | ||||
Swissprot | Q7XT42 | 7e-56 | SPL7_ORYSJ; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A445M028 | 0.0 | A0A445M028_GLYSO; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | K7K2H7 | 0.0 | K7K2H7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G15134.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9613 | 27 | 38 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 2e-35 | squamosa promoter binding protein-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G075800.1.p |
Entrez Gene | 100806582 |
Publications ? help Back to Top | |||
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