PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G074200.1.p | ||||||||
Common Name | GLYMA_01G074200, LOC100792964 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 28908.4 Da PI: 5.1488 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.4 | 7.3e-18 | 72 | 123 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y+GVr + +g+Wv+eIr+p++ + r++lg++ tae+Aa+a++ a+++ +g+ Glyma.01G074200.1.p 72 PSYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAVKGH 123 57*****998.**********843...6**********************998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.32E-31 | 72 | 132 | No hit | No description |
Pfam | PF00847 | 6.2E-13 | 72 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.143 | 73 | 130 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-31 | 73 | 131 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-21 | 73 | 131 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.3E-36 | 73 | 136 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 74 | 85 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 96 | 112 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MESDAGENLF GTFSSSTTSI TASSSSSPTS STTTSSNSCT KHDSKISPPQ NQNTPNSKKR 60 QRSDDNENKH HPSYRGVRMR AWGKWVSEIR EPRKKSRIWL GTYPTAEMAA RAHDVAALAV 120 KGHSAFLNFP NLAQDLPRPT TTSPKDIQAA AAKAATTTFF DDEIVNHCQA EKAEQNHGEQ 180 QASPSTLCMM DNSTEAEQIQ AEQASSTQES SSSHSTADEE TLFDLPDLFP DGNSGLFSYS 240 SCWHLCAVDS GFRLEEQFLW ENF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-17 | 71 | 131 | 12 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G074200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015037 | 1e-100 | AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516798.1 | 0.0 | ethylene-responsive transcription factor ERF034 | ||||
Refseq | XP_028232761.1 | 0.0 | ethylene-responsive transcription factor ERF034-like | ||||
Swissprot | Q8LBQ7 | 6e-66 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | A0A0B2QV41 | 0.0 | A0A0B2QV41_GLYSO; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | I1J6D4 | 0.0 | I1J6D4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G13410.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF192 | 34 | 263 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44940.1 | 9e-48 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G074200.1.p |
Entrez Gene | 100792964 |
Publications ? help Back to Top | |||
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