PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G073100.1.p
Common NameGLYMA_01G073100, LOC102662403
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GATA
Protein Properties Length: 208aa    MW: 23828.1 Da    PI: 8.5798
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G073100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA53.63.1e-17141173133
                 GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                          Cs+C ++kTp+WR gp g  tLCnaCG++++  
  Glyma.01G073100.1.p 141 CSHCDAIKTPQWRTGPFGRNTLCNACGIRFKAG 173
                          ******************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.3E-13135185IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.05E-14136196No hitNo description
PROSITE profilePS5011411.569139171IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.9E-14139173IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.80E-14140191No hitNo description
PfamPF003204.5E-15141173IPR000679Zinc finger, GATA-type
PROSITE patternPS003440141166IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVIANYGFLE HPLCVPQDSL ECLGMMNWEG MDSIDSMFST PWESEKERLE QPEKDKTERK  60
SFTDVSNNQA NHMSLLTRLD DESNLAAEKS QTKILKTKNI AARSLSKCKI DFLNSTQSGR  120
DAKIWEKRCG HKDARIWERR CSHCDAIKTP QWRTGPFGRN TLCNACGIRF KAGKLYPEYR  180
PADSPTFDVS KHSNVHKEIM KMRNHLS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G073100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574026.11e-156GATA transcription factor 9
RefseqXP_028229390.11e-156GATA transcription factor 9-like
TrEMBLA0A0B2PD171e-155A0A0B2PD17_GLYSO; GATA transcription factor 3
TrEMBLA0A0R0L8031e-155A0A0R0L803_SOYBN; Uncharacterized protein
STRINGGLYMA01G10390.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3498522
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.23e-30GATA transcription factor 3