PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G064100.1.p | ||||||||
Common Name | GLYMA_01G064100, LOC100813520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28285.8 Da PI: 6.943 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 99.8 | 1.1e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Glyma.01G064100.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 87 | 3.7e-29 | 80 | 174 | 6 | 100 |
K-box 6 gksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 +++ e ++++ +qe+ kLk+++e Lq++qR+llGe+Le L++++L+qLe+qL++slk+iRs K++ +l+q+++l +ke++l e+n+ Lr Glyma.01G064100.1.p 80 VQHQPEIETQRRYQEYLKLKSRVEALQQTQRNLLGEELEHLDVNDLEQLERQLDSSLKQIRSNKTQQMLDQLSDLHRKEEMLLETNNILR 169 556778899********************************************************************************* PP K-box 96 kklee 100 +klee Glyma.01G064100.1.p 170 NKLEE 174 **987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.235 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.1E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-33 | 2 | 80 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.42E-44 | 2 | 78 | No hit | No description |
PRINTS | PR00404 | 4.7E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.7E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 7.0E-25 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.737 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFCSG 60 HSTAKTLERY HRCSYGALEV QHQPEIETQR RYQEYLKLKS RVEALQQTQR NLLGEELEHL 120 DVNDLEQLER QLDSSLKQIR SNKTQQMLDQ LSDLHRKEEM LLETNNILRN KLEEINVALQ 180 PTWEAREQNA PYNCHPPQTE GYYETATAHC SSTLRIGYDS SGLNEAGGAA GASAQNASEF 240 MHGWMN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 7e-26 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 7e-26 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 7e-26 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 7e-26 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.17000 | 0.0 | flower| seed coat |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G064100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 4e-91 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516451.1 | 0.0 | MADS-box protein CMB1 | ||||
Refseq | XP_028232011.1 | 0.0 | MADS-box protein CMB1-like | ||||
Swissprot | Q8LLR2 | 1e-103 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A0B2R2W8 | 0.0 | A0A0B2R2W8_GLYSO; MADS-box protein CMB1 | ||||
TrEMBL | I1J645 | 0.0 | I1J645_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G08130.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 2e-91 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G064100.1.p |
Entrez Gene | 100813520 |
Publications ? help Back to Top | |||
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