PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G063700.1.p | ||||||||
Common Name | GLYMA_01G063700, LOC100797372 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SBP | ||||||||
Protein Properties | Length: 484aa MW: 54348.7 Da PI: 7.0917 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.4 | 7.2e-42 | 180 | 256 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gC++dls+ k+yh+rhkvC++hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCrrrLa+hnerrrk+q Glyma.01G063700.1.p 180 VCQVYGCNMDLSSSKDYHKRHKVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLVEFDDGKRSCRRRLAGHNERRRKPQ 256 6**************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.9E-34 | 175 | 242 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.607 | 178 | 255 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.19E-39 | 179 | 260 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.6E-31 | 181 | 254 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 484 aa Download sequence Send to blast |
MESWSYVPEE KGYLFSDEME FSLDAFMRSR KALVEWDNKS NFVERDGFNS DREVVKSMEF 60 VDLGFPDLLQ KSFHGSLPLE TSSYELDSNN SSKRGNSSTH VIALDSSMGE EESNSKHLSS 120 LVESKTQDSS LIDLKLGRLA DCKGASSDKV EKEGFTLTSI HPTTLSKRAR TSSLPAQAPV 180 CQVYGCNMDL SSSKDYHKRH KVCDAHSKTA KVIVNGIEQR FCQQCSRFHL LVEFDDGKRS 240 CRRRLAGHNE RRRKPQFDYM TGKQHKILQS YQAGTKYLGS SLQNKPMFPF QDIFQSSILF 300 PGKHAQISQS GRVKLEEDSI YSSQLTAPIT LDQESSSCAL SLLSDQSQYL SHHAACNPLT 360 SHRVFSGICI PNRDGQISET PLRISSADKH APNESFPCNT TSKEVIKNRS AATFSNTGHA 420 LRVHHGDDIC QPSELLDVKH HFSSEHAATV DLFQLSSHLQ RVEQQRNSVL VKWENEDYCF 480 PTV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 172 | 254 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.11934 | 6e-73 | epicotyl |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 14126564 | 6e-73 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G063700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 0.0 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573162.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
Refseq | XP_006573163.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
Refseq | XP_006573164.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
Refseq | XP_028231955.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
Refseq | XP_028231963.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
Refseq | XP_028231966.1 | 0.0 | squamosa promoter-binding-like protein 6 isoform X1 | ||||
TrEMBL | A0A0R0L7L1 | 0.0 | A0A0R0L7L1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G08056.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1819 | 34 | 93 | Representative plant | OGRP97 | 17 | 230 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69170.1 | 2e-64 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G063700.1.p |
Entrez Gene | 100797372 |