PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G063500.1.p
Common NameGLYMA_01G063500, LOC100795791
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family YABBY
Protein Properties Length: 175aa    MW: 19050.6 Da    PI: 9.6084
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G063500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY1556.4e-48101572163
                YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                          d++  se++Cyv+CnfCnt+lav +P + l+ +vtv+CGhC++l  ++ +  s +  + +h            +  + + + sn +k ++
  Glyma.01G063500.1.p  10 DLVPPSEHLCYVRCNFCNTVLAVGIPCKRLLDTVTVKCGHCSNLSFLSTRPPSSQNQSIDH------------TTLSLQGFYSNAKKGQA 87 
                          77899*************************************9877555555555555554............33333444444433333 PP

                YABBY  92 astsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahf 163
                          +s+s s    +++++  +p++   v++PPek+ r Psaynrf+keeiqrika+nP+i hreafsaaaknWa f
  Glyma.01G063500.1.p  88 SSSSSSP---TTSNESVSPKAASfVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARF 157
                          3332222...244555666666669**********************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.3E-5614157IPR006780YABBY protein
SuperFamilySSF470956.55E-9101155IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.102.4E-5110156IPR009071High mobility group box domain
CDDcd013905.10E-6118154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010254Biological Processnectary development
GO:0010582Biological Processfloral meristem determinacy
GO:0048479Biological Processstyle development
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MNHEDKLTMD LVPPSEHLCY VRCNFCNTVL AVGIPCKRLL DTVTVKCGHC SNLSFLSTRP  60
PSSQNQSIDH TTLSLQGFYS NAKKGQASSS SSSPTTSNES VSPKAASFVV KPPEKKHRLP  120
SAYNRFMKEE IQRIKAANPE IPHREAFSAA AKNWARFIPN SPTSSVSATK VNAD*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00220DAPTransfer from AT1G69180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G063500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0119241e-170KR011924.1 Thermopsis turcica CRABS CLAW mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517857.11e-127protein CRABS CLAW
RefseqXP_028221257.11e-127protein CRABS CLAW-like
SwissprotQ76EJ06e-67YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLA0A445LZK11e-125A0A445LZK1_GLYSO; Protein DROOPING LEAF
TrEMBLK7K2691e-125K7K269_SOYBN; Uncharacterized protein
STRINGGLYMA01G08030.21e-126(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102593040
Representative plantOGRP90691114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.11e-66YABBY family protein