PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G059300.1.p | ||||||||
Common Name | GLYMA_01G059300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 138aa MW: 15417.8 Da PI: 4.7698 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.9 | 3.5e-11 | 11 | 55 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 W++e d+ + +a + + + +W++I++ ++ ++tl+++k+++ Glyma.01G059300.1.p 11 EWSKEQDKAFENALAIHLEDasdRWEKIMADVP-RKTLEEIKHHYE 55 7*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.2E-7 | 8 | 60 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.237 | 10 | 58 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 3.5E-4 | 11 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.59E-7 | 11 | 58 | No hit | No description |
Pfam | PF00249 | 2.5E-7 | 11 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.2E-9 | 11 | 65 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MTMDEVGSSS EWSKEQDKAF ENALAIHLED ASDRWEKIMA DVPRKTLEEI KHHYELLVED 60 VNQIESGCVP LASYNSSPEG SISHASDEGA GKKGGHSWNS NNESNHGTKA SRSDQERRKG 120 IAWTEDEHRL VYLCFNI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 8e-19 | 7 | 77 | 6 | 76 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.60889 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G059300.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096693 | 1e-170 | BT096693.1 Soybean clone JCVI-FLGm-25B10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028185407.1 | 3e-91 | transcription factor SRM1-like | ||||
Swissprot | Q9FNN6 | 6e-48 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | K7K236 | 5e-97 | K7K236_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G07212.1 | 9e-98 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16956 | 5 | 8 | Representative plant | OGRP275 | 17 | 122 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08520.1 | 2e-50 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G059300.1.p |
Publications ? help Back to Top | |||
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