PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.01G053800.1.p | ||||||||
Common Name | GLYMA_01G053800, LOC100127369 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 456aa MW: 49576.6 Da PI: 7.5577 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104 | 8.3e-33 | 175 | 231 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgsefprsYY+Ct+++C+vkkkvers +++v+ i+Y+geHnh+ Glyma.01G053800.1.p 175 DDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCSVKKKVERSL-EGHVTAIIYKGEHNHQ 231 8****************************************.***************8 PP | |||||||
2 | WRKY | 106.9 | 1e-33 | 342 | 400 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC+v+k+ver+++dpk+v++tYeg+Hnh+ Glyma.01G053800.1.p 342 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTQGCNVRKHVERASTDPKAVITTYEGKHNHD 400 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.9E-29 | 161 | 233 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-25 | 172 | 233 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-35 | 174 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.169 | 175 | 233 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.8E-25 | 175 | 231 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-37 | 327 | 402 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-30 | 334 | 402 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 39.18 | 337 | 402 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 342 | 401 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 343 | 400 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus | ||||
GO:1900425 | Biological Process | negative regulation of defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 456 aa Download sequence Send to blast |
MAGGGGGDRP PWKEAAPPRP TITLPPRSGS METLFNGGFS PGPMTLLSGF LGDGDDGKSF 60 SQLLAGAMAS PVAGAVADGV MDSPSLFSPS QVSFGMTHQQ ALTQVSAQAS QANSNMHIQA 120 EHSLTQASAA TFNTTQQLIP PLNADSWATM TESADHSHSE QRLQSSLLNV DKPADDGYNW 180 RKYGQKQVKG SEFPRSYYKC THPNCSVKKK VERSLEGHVT AIIYKGEHNH QRPHPNKRSK 240 DTMTSNANSN IQGSVDSTYQ GTTTNSMSKM DPESSQATAD HLSGTSESEE VGDHETEVDE 300 KNVEPDPKRR KAEVSQSDPA SSHRTVTEPR IIVQTTSEVD LLDDGYRWRK YGQKVVKGNP 360 YPRSYYKCTT QGCNVRKHVE RASTDPKAVI TTYEGKHNHD VPAAKNNSHT MASNTASQLK 420 SHNTNPEKHN FGSRGMGGNE QQPVARLRLK EEQIT* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 6e-43 | 175 | 403 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 6e-43 | 175 | 403 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.7467 | 0.0 | epicotyl| hypocotyl| leaf| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In young, mature and senescent leaves. {ECO:0000269|PubMed:11722756}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.01G053800.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | EU019557 | 0.0 | EU019557.1 Glycine max WRKY9 (WRKY9) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003517814.1 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9XI90 | 1e-151 | WRKY4_ARATH; Probable WRKY transcription factor 4 | ||||
TrEMBL | I1J5V4 | 0.0 | I1J5V4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G06550.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1545 | 34 | 100 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G13960.1 | 1e-145 | WRKY DNA-binding protein 4 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.01G053800.1.p |
Entrez Gene | 100127369 |
Publications ? help Back to Top | |||
---|---|---|---|
|