PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G051600.1.p
Common NameGLYMA_01G051600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 290aa    MW: 32601.2 Da    PI: 8.1535
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G051600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.95.7e-191461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEd++lv +v+++  g+W++++++ g+ R++k+c++rw +yl
  Glyma.01G051600.1.p 14 KGPWTPEEDKKLVAYVEKHDHGNWHSVPAKAGLQRCGKSCRLRWINYL 61
                         79********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129423.684965IPR017930Myb domain
SuperFamilySSF466898.99E-251197IPR009057Homeodomain-like
SMARTSM007176.2E-151363IPR001005SANT/Myb domain
PfamPF002494.3E-171461IPR001005SANT/Myb domain
CDDcd001671.12E-121661No hitNo description
PROSITE profilePS500905.256298IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.606.2E-1165104IPR009057Homeodomain-like
SMARTSM007170.02366103IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRMPCCEKV GLKKGPWTPE EDKKLVAYVE KHDHGNWHSV PAKAGLQRCG KSCRLRWINY  60
LKPDIKRGNF SMEEDRTIIQ LHALLGNKTD NEIKNYWNTN VKKRFIRMSL DPITHKPMKS  120
NTFEAHDEFK DITNIGHVSQ WESARLEAEA RGSMLQVGSG SLHLPRLILS KIPTQPCPSS  180
NLLSTEHKRV YNMYALVLAT NHDLQSSVST LSVPKLPAVS TNIGQFTDME NLLSYNGDGN  240
VVEISSHIPK VMEGCASNLQ DDDIIMAVEA FRTPRNTSIQ ELFDESASR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-20121055108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G051600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517807.10.0transcription factor MYB106
RefseqXP_028221355.10.0transcription factor MYB106-like
SwissprotQ9LE635e-73MY106_ARATH; Transcription factor MYB106
TrEMBLA0A445LZ500.0A0A445LZ50_GLYSO; Transcription factor MYB106
TrEMBLK7K1W90.0K7K1W9_SOYBN; Uncharacterized protein
STRINGGLYMA01G06181.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13536826
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.16e-75myb domain protein 16