PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G049400.1.p | ||||||||
Common Name | GLYMA_01G049400, LOC100775201 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 480aa MW: 52553.2 Da PI: 8.3471 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 124.1 | 4.7e-39 | 132 | 191 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCyynny+++qPr+fCk C+ryWt+GG++rnvPvG+grrknk++ Glyma.01G049400.1.p 132 PDKVLPCPRCNSMDTKFCYYNNYNVNQPRHFCKHCQRYWTAGGTMRNVPVGAGRRKNKNT 191 78999*****************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 2.0E-30 | 130 | 189 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 5.9E-32 | 133 | 190 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.733 | 136 | 190 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 138 | 174 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MSEVVIKDSA IKLFGRTISL PRNTKNEVSP DEPAPPEDSS SSFPREVSST TEYDAGDKKP 60 SRKELTSTQE DVEASHQTLE ETKSPTSSSC NLENPKTPST ERETSILKSF KNGHQSDTTT 120 TCPSQDKTPK KPDKVLPCPR CNSMDTKFCY YNNYNVNQPR HFCKHCQRYW TAGGTMRNVP 180 VGAGRRKNKN TPSVSHFRQI MVPEGLQNGS LHGAVLTFGS DSPLCDSMAS VLSLAEKTTQ 240 NGVLNGFHSP NTNTITSNKG DEYYDTVMGS TLSEKRHNAT TSTNSHEKSL DNHKSYHHQG 300 FTPQLCFPGS SSSSPWPYPW NPTKTPSAFC NPVPFYTTQA FWGCMPPPSW SVNYQSAPSS 360 GPNSPTLGKH SRDGDILFQK PSTDMAENNN NNNTVLIPKT LRIDDPTEAA KSSIWSTLGI 420 KNEKGNSLNG GGLFKAFASK GSSDEKKNNH VMMVEASLSP VLQANPAALS RSLVFHERT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.59276 | 0.0 | flower| hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G049400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573116.1 | 0.0 | cyclic dof factor 1 | ||||
Refseq | XP_028230867.1 | 0.0 | cyclic dof factor 1-like | ||||
TrEMBL | A0A445LZ27 | 0.0 | A0A445LZ27_GLYSO; Cyclic dof factor 3 | ||||
TrEMBL | K7K1V7 | 0.0 | K7K1V7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G05960.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF625 | 34 | 147 | Representative plant | OGRP38 | 17 | 445 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 3e-74 | cycling DOF factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G049400.1.p |
Entrez Gene | 100775201 |