PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G049100.1.p
Common NameGLYMA_01G049100, LOC100784670
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 345aa    MW: 38176.1 Da    PI: 6.6199
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G049100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.51.1e-311569155
              G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                         kprl+WtpeLH+rF+ea +qLGG++kAtPk+++++m+++gLtl+h+kSHLQkYRl
  Glyma.01G049100.1.p 15 KPRLKWTPELHRRFIEATNQLGGADKATPKSLMRVMGIPGLTLYHLKSHLQKYRL 69
                         79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.3971272IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-301370IPR009057Homeodomain-like
SuperFamilySSF466891.56E-161470IPR009057Homeodomain-like
TIGRFAMsTIGR015577.1E-221570IPR006447Myb domain, plants
PfamPF002493.3E-71768IPR001005SANT/Myb domain
PfamPF143796.6E-23113159IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDPQSMHFVL STDSKPRLKW TPELHRRFIE ATNQLGGADK ATPKSLMRVM GIPGLTLYHL  60
KSHLQKYRLG KSQELETCSD NKQEDYIETK SSSDGHCSRE ISIGAQNQLT ENMQIAQALQ  120
MQMEVQRKLH EQIEVQKHLQ LRIEAQGKYL QSVLKKAQEA LAGYNSSPVG IELTKAELSQ  180
LVTIINNACP SSPISELTET RGLSLSCGER KRDRGTMCSL ESSLTSSESS GRKEEKQPME  240
EIVEFKSSIN VSLQLPLMEI LTEDKASNGG SSNEASGRKR SATAAESDDG SCVVEQPCGK  300
RCGNKLRKAK LSEMLDLNSQ CQSDMDSTSS KTLDLNCSLN FWEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-201571258Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-201571258Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A7e-201571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B7e-201571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C7e-201571157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D7e-201571157Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-201571258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-201571258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-201571258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-201571258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-201571258Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-201571258Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G049100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353790.0AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517998.20.0myb family transcription factor PHL8 isoform X2
RefseqXP_028230856.10.0myb family transcription factor PHL8-like isoform X1
SwissprotF4I2741e-79PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A445LYX70.0A0A445LYX7_GLYSO; Myb family transcription factor PHL8
TrEMBLK7K1V40.0K7K1V4_SOYBN; Uncharacterized protein
STRINGGLYMA01G05920.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52183253
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.15e-79G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]