PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G047900.1.p
Common NameGLYMA_01G047900, LOC100817446
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 297aa    MW: 32851.9 Da    PI: 8.8503
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G047900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.4e-3248104358
          ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                          +v YkeClkNhAas+Ggha+DGCgEfmps+ ++ +++++l+CaACgCHRnFHRr+ +
  Glyma.01G047900.1.p  48 AVAYKECLKNHAASIGGHALDGCGEFMPSSFSNpNEPRSLTCAACGCHRNFHRRRDT 104
                          789**************************9999999******************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.7E-2749102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.20751102IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-3051101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-1951101IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.29E-18186260IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.3E-29192260IPR009057Homeodomain-like
TIGRFAMsTIGR015654.2E-27199256IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MDLTKDTNTL DTNSQTPPQP FTTNGSLKDH HHHHPTTVSP PQQPPSTAVA YKECLKNHAA  60
SIGGHALDGC GEFMPSSFSN PNEPRSLTCA ACGCHRNFHR RRDTPENHHR SNSRPNFLSF  120
YHSPPPSRHG AGPSSSPSPS PMSSPSPPPI SHHFPPSSHH FQGPIPAHGL LGLGNEHHHH  180
MSFNFNSSSH WNPENSGGKK RHRTKFSHEQ KEKMHNFAEK LGWRMQKGDE GLVQDFCKEI  240
GVSRGVFKVW MHNNKNTSGR KKSLEPGERI NGTGSDSTDN NNNHPYNTNS TNDDTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-202002571875ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.304610.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G047900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2353790.0AC235379.1 Glycine max strain Williams 82 clone GM_WBb0110B11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517792.10.0zinc-finger homeodomain protein 11
TrEMBLI1J5R00.0I1J5R0_SOYBN; Uncharacterized protein
STRINGGLYMA01G05810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15210.12e-26homeobox protein 30