PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G046800.1.p
Common NameGLYMA_01G046800, LOC100170721
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 439aa    MW: 49723.1 Da    PI: 6.2634
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G046800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.5e-52161431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d+
  Glyma.01G046800.1.p  16 MLPGFRFHPTDEELVGFYLKRKIQQRPLTI-ELIKQLDIYKFDPWDLPKLATTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDR 104
                          579*************************99.89***************8888999*********************************** PP

                  NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Glyma.01G046800.1.p 105 PIYSSeGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143
                          ****956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.67E-5815173IPR003441NAC domain
PROSITE profilePS5100557.31616173IPR003441NAC domain
PfamPF023651.6E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MMEERNNDAE KLDEVMLPGF RFHPTDEELV GFYLKRKIQQ RPLTIELIKQ LDIYKFDPWD  60
LPKLATTGEK EWYFYCPRDR KYRNSARPNR VTGAGFWKAT GTDRPIYSSE GSKCIGLKKS  120
LVFYKGRAAK GVKTDWMMHE FRLPSLTDSL SPKYIDKTIP ANESWAICRI FKKINATAQR  180
TLSQSWASSL PPDTRTSDHH IQTKDQDSTT QFCSDNMPMT NKTTLTSQFC NNNYNDSQPL  240
PTNSSSSPLC PLDVASYKSI INPLLYKAFD HFPISNEDLR TSLLFSPPFE TSDANPKSTM  300
VDVSSMLLSL PSSVLGDFNK TTSEDTNTAS NFGVLQEHCS GYPIPFLPEM QTTFGNQQQQ  360
YCDNINALVK GPNVNVPRVD DQELELETVV QRSIGFPLSA TMPLNIVDAW KSNNLLWDTS  420
SFPCDMPSSY YSTTKCYT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-521818019171NO APICAL MERISTEM PROTEIN
1ut4_B1e-521818019171NO APICAL MERISTEM PROTEIN
1ut7_A1e-521818019171NO APICAL MERISTEM PROTEIN
1ut7_B1e-521818019171NO APICAL MERISTEM PROTEIN
4dul_A1e-521818019171NAC domain-containing protein 19
4dul_B1e-521818019171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.233420.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First expressed at globular stage onward in the COL progenitors after the first division of the hypophyseal cell. Later observed in these cells and their descendants, mostly in direct daughter cells. Also detected in the Epi/LRC stem cells and daughters, and is retained in maturing LRC layers. Present in elongated stem cells that are about to divide. {ECO:0000269|PubMed:19081078}.
UniprotTISSUE SPECIFICITY: Expressed in root cap stem cells and their immediate daughters. {ECO:0000269|PubMed:19081078}.
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G046800.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619280.0EU661928.1 Glycine max NAC domain protein (NAC36) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014617485.10.0protein FEZ
SwissprotQ9ZVH01e-108FEZ_ARATH; Protein FEZ
TrEMBLI1J5Q40.0I1J5Q4_SOYBN; Uncharacterized protein
STRINGGLYMA01G05680.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20133490
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-110NAC family protein
Publications ? help Back to Top
  1. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]