PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G044600.2.p | ||||||||
Common Name | GLYMA_01G044600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 284aa MW: 32186 Da PI: 6.5134 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57 | 3.3e-18 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Glyma.01G044600.2.p 78 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 131 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.4 | 1.7e-42 | 77 | 167 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+y+a+k++n++L++++++L++e Glyma.01G044600.2.p 77 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAE 166 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Glyma.01G044600.2.p 167 I 167 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.28E-19 | 68 | 135 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 73 | 133 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 76 | 137 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.6E-15 | 78 | 131 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.39E-16 | 78 | 134 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-19 | 80 | 140 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.1E-5 | 104 | 113 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 108 | 131 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.1E-5 | 113 | 129 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-16 | 133 | 173 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MAFFPANFML QTPHHDDHHH QPPPSLTSIL PTCAPQEYHG GVTFLGKRSM SFSSGIEHGE 60 EVNAEEDLSD DGSQAGEKKR RLNMEQVKTL EKSFELGNKL EPERKMQLAR ALGLQPRQIA 120 IWFQNRRARW KTKQLEKDYD VLKRQYEAVK SDNDALQAQN QKLQAEILAL KSREPTESIN 180 LNKETEGSCS NRSENSSDIK LDISRTPAID SPHSTHQQSR PLFPPSSARP AGVAQLFQTS 240 SRPDLPSCQK IDQMVKEESL SNMFCGMDDQ SGFWPWLEQQ HFN* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 125 | 133 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4415 | 0.0 | epicotyl| hypocotyl| pod| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G044600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096695 | 0.0 | BT096695.1 Soybean clone JCVI-FLGm-21E13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001241886.2 | 0.0 | homeobox-leucine zipper protein ATHB-13-like | ||||
Refseq | XP_006572887.1 | 0.0 | uncharacterized protein LOC100814080 isoform X3 | ||||
Refseq | XP_028230631.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like isoform X1 | ||||
Refseq | XP_028230633.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like isoform X3 | ||||
Swissprot | Q8LC03 | 1e-122 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A0R0LF96 | 0.0 | A0A0R0LF96_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G05230.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-118 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G044600.2.p |
Publications ? help Back to Top | |||
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