PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G044600.1.p | ||||||||
Common Name | GLYMA_01G044600, LOC100814080 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 292aa MW: 33216.1 Da PI: 6.5855 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 86 | 139 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe +++ e++ +LA+ lgL+ rq+ +WFqNrRa++k Glyma.01G044600.1.p 86 KKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWK 139 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132.3 | 1.8e-42 | 85 | 175 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 ekkrrl+ eqvk+LE+sFe +kLeperK++lar+Lglqprq+a+WFqnrRAR+ktkqlEkdy++Lkr+y+a+k++n++L++++++L++e Glyma.01G044600.1.p 85 EKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYEAVKSDNDALQAQNQKLQAE 174 69**************************************************************************************98 PP HD-ZIP_I/II 91 l 91 + Glyma.01G044600.1.p 175 I 175 7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.37E-19 | 76 | 143 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.394 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.8E-18 | 84 | 145 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.81E-16 | 86 | 142 | No hit | No description |
Pfam | PF00046 | 1.6E-15 | 86 | 139 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-19 | 88 | 148 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.2E-5 | 112 | 121 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.2E-5 | 121 | 137 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-16 | 141 | 181 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009744 | Biological Process | response to sucrose | ||||
GO:0048826 | Biological Process | cotyledon morphogenesis | ||||
GO:0080022 | Biological Process | primary root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 292 aa Download sequence Send to blast |
MWHKTCNEMA FFPANFMLQT PHHDDHHHQP PPSLTSILPT CAPQEYHGGV TFLGKRSMSF 60 SSGIEHGEEV NAEEDLSDDG SQAGEKKRRL NMEQVKTLEK SFELGNKLEP ERKMQLARAL 120 GLQPRQIAIW FQNRRARWKT KQLEKDYDVL KRQYEAVKSD NDALQAQNQK LQAEILALKS 180 REPTESINLN KETEGSCSNR SENSSDIKLD ISRTPAIDSP HSTHQQSRPL FPPSSARPAG 240 VAQLFQTSSR PDLPSCQKID QMVKEESLSN MFCGMDDQSG FWPWLEQQHF N* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 133 | 141 | RRARWKTKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4415 | 0.0 | epicotyl| hypocotyl| pod| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Predominantly expressed in leaves and flowers. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00225 | DAP | Transfer from AT1G69780 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G044600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096695 | 0.0 | BT096695.1 Soybean clone JCVI-FLGm-21E13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006572886.1 | 0.0 | uncharacterized protein LOC100814080 isoform X2 | ||||
Refseq | XP_028230632.1 | 0.0 | homeobox-leucine zipper protein ATHB-13-like isoform X2 | ||||
Swissprot | Q8LC03 | 1e-123 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A0R0LDX5 | 0.0 | A0A0R0LDX5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G05230.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 1e-119 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G044600.1.p |
Entrez Gene | 100814080 |
Publications ? help Back to Top | |||
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