PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G041700.1.p
Common NameGLYMA_01G041700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 346aa    MW: 39174 Da    PI: 4.3561
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G041700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.7e-1986139356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k++++t+eq++ Le+ Fe ++++  e++ +LAk+lgL+ rqV +WFqNrRa+ k
  Glyma.01G041700.1.p  86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFK 139
                          56689***********************************************98 PP
2HD-ZIP_I/II130.75.6e-4286177293
          HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                          kkrrl++eqv++LE++Fe e+kLeperKv+la+eLglqprqva+WFqnrRAR+ktkqlEkdy +Lk++yd+lk + e+L +e+++L++e+
  Glyma.01G041700.1.p  86 KKRRLTSEQVQFLERNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGVLKASYDRLKGDYESLVQENDKLKAEV 175
                          9**************************************************************************************999 PP

          HD-ZIP_I/II  92 ke 93 
                          ++
  Glyma.01G041700.1.p 176 NS 177
                          75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.65E-1977143IPR009057Homeodomain-like
PROSITE profilePS5007117.37881141IPR001356Homeobox domain
SMARTSM003891.5E-1783145IPR001356Homeobox domain
CDDcd000861.54E-1784142No hitNo description
PfamPF000462.7E-1686139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.5E-2088148IPR009057Homeodomain-like
PRINTSPR000315.5E-6112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000315.5E-6121137IPR000047Helix-turn-helix motif
PfamPF021835.7E-18141182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MASGKLYAGS NMSLLLQNER LPCSSEVLES LWAHTSNPAS FQGSKSVVDF ENVNGSRVTD  60
RPFFQALEKE ENCDEDYEGC FHQPGKKRRL TSEQVQFLER NFEVENKLEP ERKVQLAKEL  120
GLQPRQVAIW FQNRRARFKT KQLEKDYGVL KASYDRLKGD YESLVQENDK LKAEVNSLES  180
KLILRDKEKE ENSDDKSSPD DAVNSSPHNN KEPIMDLLIS KNATTSENGT EVSTLPLPIM  240
VTCKQEDANS AKSDVLDSDS PHCTDYGNHP SSFVEPADSS HAFEPEDHSE DFSQDEEDNL  300
SENFLTLPSS CCLPKVEEPC YDDPPENSCN FGFHVEDQTF CFWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARFKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.346410.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G041700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941970.0BT094197.1 Soybean clone JCVI-FLGm-24N17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574472.10.0homeodomain-leucine zipper protein 57 isoform X1
RefseqXP_028193699.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A445LYM90.0A0A445LYM9_GLYSO; Homeobox-leucine zipper protein HAT5 isoform A
TrEMBLI1J5K20.0I1J5K2_SOYBN; Uncharacterized protein
STRINGGLYMA01G04890.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.16e-46homeobox 1