PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G028300.1.p
Common NameGLYMA_01G028300, LOC100794719
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 310aa    MW: 35125.6 Da    PI: 5.0462
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G028300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-102522862155
                          HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
             Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                          k +yp+++++ eLAk++gL+++q+ +WF N+R ++
  Glyma.01G028300.1.p 252 KWPYPTEADKIELAKSTGLDQKQINNWFINQRKRH 286
                          569*****************************885 PP
2ELK322.8e-11206227122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELK++LlrK+++++g+Lk EFs
  Glyma.01G028300.1.p 206 ELKDRLLRKFGSHIGTLKLEFS 227
                          9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.0E-2366110IPR005540KNOX1
PfamPF037901.7E-2268109IPR005540KNOX1
SMARTSM012562.1E-26118169IPR005541KNOX2
PfamPF037915.2E-25122168IPR005541KNOX2
PROSITE profilePS512139.83206226IPR005539ELK domain
SMARTSM011886.5E-6206227IPR005539ELK domain
PfamPF037893.5E-8206227IPR005539ELK domain
PROSITE profilePS5007113.281226289IPR001356Homeobox domain
SuperFamilySSF466891.11E-19227298IPR009057Homeodomain-like
SMARTSM003892.3E-14228293IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-28231290IPR009057Homeodomain-like
CDDcd000862.07E-14238290No hitNo description
PfamPF059203.7E-18246285IPR008422Homeobox KN domain
PROSITE patternPS000270264287IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MDGMYGVPPE YADKALMTPE NLIFPPDYHH AFLSAGRIPL FGSDELFSSA DGIHRQQDED  60
DVATTTVMKA KIASHPQYSR LLQAYIDCQK VGAPPEIARL LEEIRRENDL CKSDVVSSST  120
CFGADPELDE FMETYCDMLV KYKSDLARPF EEATTFLNKI EMQLSHLCTG ASVSNVSDDG  180
GVSSDEDLST GDGDAQDGQL KGEDRELKDR LLRKFGSHIG TLKLEFSKKK KKGKLPKEAR  240
QTLLQWWNVH YKWPYPTEAD KIELAKSTGL DQKQINNWFI NQRKRHWKPS ENMQFSMMEN  300
LNGRFLADE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278900.0hypocotyl| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in torpedo stage embryos at the boundaries between the presumptive SAM and the cotyledons. Later expressed between the cotyledons and the meristem, and between the cotyledons. In seedlings, localised in stipules and at the boundaries between the SAM and the emerging primordia. Expressed at the site of lateral roots. {ECO:0000269|PubMed:16798887}.
UniprotTISSUE SPECIFICITY: Expressed predominantly in shoot apices of seedlings, and, to a lower extent, in rosette leaves. {ECO:0000269|PubMed:11311158}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G028300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2569680.0KC256968.1 Caragana korshinskii Knotted-1 homeobox protein (KN-1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003517631.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-141KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLI1J5680.0I1J568_SOYBN; Uncharacterized protein
STRINGGLYMA01G03450.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-117KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]