PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G025400.1.p | ||||||||
Common Name | GLYMA_01G025400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 364aa MW: 40351.9 Da PI: 6.8815 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.5 | 1.4e-17 | 50 | 99 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +gr++AeIrdp + r +lg+f+taeeAa a++ a+++++g Glyma.01G025400.1.p 50 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 99 59*******.**********93....35999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 22.115 | 50 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-29 | 50 | 106 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.9E-11 | 50 | 99 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.01E-21 | 50 | 107 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.7E-33 | 50 | 113 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.81E-30 | 50 | 106 | No hit | No description |
PRINTS | PR00367 | 2.0E-9 | 51 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-9 | 73 | 89 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MEEAMRRLNG VAPILGPDPK ADGGVVADNP KRSSAVNKRA LREDGGGAMR YRGVRRRPWG 60 RYAAEIRDPQ SKERRWLGTF DTAEEAACAY DCAARAMRGL KARTNFVYPT SPQPSSATTE 120 HFLPNFNNSN NFHKHSVFNH HHGNRHITGS TTCFDQPHAV DFLAPRNSSS SALNMLLFRD 180 LVHSNPSLLS SSTTHNFHDQ FYSKGASTFS SLPGDDGDGS GFFSRESSDS GLLEEIVNKF 240 LPKTKPNKCE SLPKMETFRN PQEESLLLPP LVSESTLVST AQECYDDVTK KGFLKNDSLG 300 VFSSDHQGFP MQQFDAFNGF SSVQAMALGN EQIMMNHAEN CVVEDVFQYH ELLNAFAIRM 360 QNT* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-18 | 50 | 106 | 14 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G025400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006573022.1 | 0.0 | ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | K7K1E8 | 0.0 | K7K1E8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G03110.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4100 | 32 | 56 | Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 6e-14 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G025400.1.p |