PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G016600.1.p
Common NameGLYMA_01G016600, LOC778082
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 351aa    MW: 39495.2 Da    PI: 6.5136
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G016600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.93.2e-201562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+eEde+l+d++ ++G g+W+t +++ g++R++k+c++rw +yl
  Glyma.01G016600.1.p 15 KGPWTPEEDEKLIDYISKHGHGSWRTLPKRAGLNRCGKSCRLRWTNYL 62
                         79********************************************97 PP
2Myb_DNA-binding53.46.1e-1768112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++++e++ ++++++  lG++ W++Ia +++ gRt++++k++w+++
  Glyma.01G016600.1.p  68 RGKFSEEDERIIINLHSVLGNK-WSKIATHLP-GRTDNEIKNYWNTH 112
                          89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-25765IPR009057Homeodomain-like
PROSITE profilePS5129420.0821062IPR017930Myb domain
SuperFamilySSF466893.33E-3212109IPR009057Homeodomain-like
SMARTSM007176.2E-161464IPR001005SANT/Myb domain
PfamPF002493.2E-181562IPR001005SANT/Myb domain
CDDcd001671.78E-121762No hitNo description
PROSITE profilePS5129427.6263117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-2666117IPR009057Homeodomain-like
SMARTSM007172.1E-1667115IPR001005SANT/Myb domain
PfamPF002492.0E-1568112IPR001005SANT/Myb domain
CDDcd001676.38E-1270113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MGRSPCCEEN VGVKKGPWTP EEDEKLIDYI SKHGHGSWRT LPKRAGLNRC GKSCRLRWTN  60
YLTPDIKRGK FSEEDERIII NLHSVLGNKW SKIATHLPGR TDNEIKNYWN THIRKKLLKM  120
GIDPETHKPR TDLNHLMSLS QLLGTSNLSS AMNTTWGNNP LGLQPDITQL AKIQLLQNLL  180
QLMNNYSFVN VGNNPYLLSN PNLNPLFLNG TNLFQTNKEP HVVFSGSEEY ANPGLYSQAQ  240
SECSQQDVSK SWADLEGGSI PQDTDYNKIS NTTTSRENQA ENPLPALVAF STKMGTFNQM  300
DSNIAQTSTE SPSNTFFDDW EKLLDDETSG RSYWKEILDL TSTSASPILW *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-31151177108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.285950.0hypocotyl
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G016600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006572975.10.0transcription factor MYB39
TrEMBLK7K1A10.0K7K1A1_SOYBN; Uncharacterized protein
STRINGGLYMA01G02070.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40234172
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.28e-86myb domain protein 9