PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G014800.1.p
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family G2-like
Protein Properties Length: 341aa    MW: 38110.6 Da    PI: 7.9143
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G014800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.42.9e-32194247255
              G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Glyma.01G014800.1.p 194 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 247
                          9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-15191247IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-28192247IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-24194247IPR006447Myb domain, plants
PfamPF002495.5E-7195246IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNAN PTSSWRRSTE EDMDLGFWKR ALDSRNSIQS TMAKQDSCFD  60
LSLSNPKASD NNNSNLIHHH HFQTSNATTI INPFQLPFQQ NHFFHQQQQP LFQPQHQSLS  120
QDLGFLRPIR GIPVYQNPPP IPFTQHHHLP LEASTTTPSI ISNTNTGSTP FHSQALMRSR  180
FLSRFPAKRS MRAPRMRWTS TLHARFVHAV ELLGGHERAT PKSVLELMDV KDLTLAHVKS  240
HLQMYRTVKT TDRAAASSGQ SDVYDNGSSG DTSDDLMEAW LHGKTKADSV GNVPSYLEKE  300
MDPKCLSYER ISDGSSSSNL SGSSPKKPNL DLEFSLGQPL *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-17195249458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.325300.0flower| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing phloem. {ECO:0000269|PubMed:14561401}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G014800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-102AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028227361.10.0probable transcription factor KAN2
SwissprotQ9C6165e-86KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A368UIK40.0A0A368UIK4_SOYBN; Uncharacterized protein
STRINGGLYMA01G01875.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59683452
Representative plantOGRP5701580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.12e-66G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]