PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G014600.3.p
Common NameGLYMA_01G014600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 790aa    MW: 88093 Da    PI: 5.6178
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G014600.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-2086141156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t+ q++e+e+lF+++++p+ ++r +L+++lgL+ rqVk+WFqNrR+++k
  Glyma.01G014600.3.p  86 KKRYHRHTARQIQEMESLFKECPHPDDKQRLKLSHELGLKPRQVKFWFQNRRTQMK 141
                          688899***********************************************998 PP
2START147.31.4e-462865102206
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                          la + ++elvk+ + +ep+W +ss  e + evl  +e ++              ++ea+r++ vv+ ++++lv  +ld   +W e ++  
  Glyma.01G014600.3.p 286 LAASSMAELVKMCQTNEPLWIQSS--EGEREVLNFEEHARMfvwpqnlknrseLRTEASRDTSVVIINSVTLVDAFLDAQ-KWMELFPti 372
                          78899*******************..555555555555444667777888889***************************.9*9999999 PP

                          ..EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                START  78 ..kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                            +a+t++ issg      g+lqlm ae+q+lsplv+ R+  f+Ry++q  ++g+w+ivd  vds  ++  ++s+ R  ++ Sg++i+++
  Glyma.01G014600.3.p 373 vsRAKTVQIISSGasglasGTLQLMCAEFQVLSPLVStRETHFLRYCQQnAEEGTWAIVDFPVDSFHQNF-HPSYPRYCRRSSGCVIQDM 461
                          99***************************************************************99999.9****************** PP

                          CTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 158 snghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +ng+s+vtwveh+ ++++ +h+++   v sg+a+ga++w+  lqrqce+
  Glyma.01G014600.3.p 462 PNGYSRVTWVEHAKVEEKPVHQIFCNYVYSGMAFGAQRWLGVLQRQCER 510
                          ***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.55E-1974144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.1E-2181149IPR009057Homeodomain-like
PROSITE profilePS5007116.95783143IPR001356Homeobox domain
SMARTSM003891.9E-1884147IPR001356Homeobox domain
CDDcd000864.44E-1886144No hitNo description
PfamPF000461.0E-1786141IPR001356Homeobox domain
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PROSITE profilePS5084842.613276513IPR002913START domain
SuperFamilySSF559614.26E-31277512No hitNo description
CDDcd088756.94E-112280509No hitNo description
SMARTSM002342.5E-29285510IPR002913START domain
PfamPF018521.1E-38286510IPR002913START domain
Gene3DG3DSA:3.30.530.204.8E-4348473IPR023393START-like domain
SuperFamilySSF559616.46E-19537767No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 790 aa     Download sequence    Send to blast
MYGDCQVMSS MGGNVVVNSD TLFSSSIQNS SFNFIPTMPF QPFPSMKEED GILRGKEEME  60
SGSGSEQLVE DKSGYEQESH EEPTKKKRYH RHTARQIQEM ESLFKECPHP DDKQRLKLSH  120
ELGLKPRQVK FWFQNRRTQM KAQQDRADNM ILRAENETLK SENYRLQAAL RNVICPNCGG  180
PCIMGADMGF DEHQLRIENA RLREELERVC CLTTRYTGRP IQTMAADPTL MAPSLDLDMN  240
MYPRHFSDPI APCTEMIPVP MLPPEASPFS EGGVLMEEEK SLALELAASS MAELVKMCQT  300
NEPLWIQSSE GEREVLNFEE HARMFVWPQN LKNRSELRTE ASRDTSVVII NSVTLVDAFL  360
DAQKWMELFP TIVSRAKTVQ IISSGASGLA SGTLQLMCAE FQVLSPLVST RETHFLRYCQ  420
QNAEEGTWAI VDFPVDSFHQ NFHPSYPRYC RRSSGCVIQD MPNGYSRVTW VEHAKVEEKP  480
VHQIFCNYVY SGMAFGAQRW LGVLQRQCER VASLMARNIS DLGVIPSPDA RKNLMKLAQR  540
MIKTFSLNMS TSGGQSWTAI SDSPEDTVRI TTRKITEPGQ PNGVILSAVS TTWLPYSHTK  600
VFDLLRDERH RSQMDTLSNG NSLNEVAHIA NGSHPGNCIS LLRINVASNS SQNVELMLQE  660
SCTDQSGSLV VYTTIDVDAI QLAMSGEDPS CIALLPQGFK IVPMLSSPIT DTTNSSEPPI  720
SLNNNSGGCL LTMGVQVLAS TIPSAKLNLS SVTAINNHLC NTLHQIEAAL SSTNSHENGF  780
FLCTEPTKQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.130150.0cotyledon| flower| leaf| seed coat
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G014600.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-147AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001352051.10.0homeobox-leucine zipper protein HDG5-like
RefseqXP_025984801.10.0homeobox-leucine zipper protein HDG5-like isoform X1
RefseqXP_028227304.10.0homeobox-leucine zipper protein HDG5-like
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A0B2P6B10.0A0A0B2P6B1_GLYSO; Homeobox-leucine zipper protein ROC3
TrEMBLI1J4R30.0I1J4R3_SOYBN; Uncharacterized protein
STRINGGLYMA01G01850.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7