PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G009600.1.p | ||||||||
Common Name | GLYMA_01G009600, LOC100810146 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | G2-like | ||||||||
Protein Properties | Length: 271aa MW: 30348.2 Da PI: 9.2032 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.5 | 6.4e-33 | 21 | 75 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Glyma.01G009600.1.p 21 KPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRL 75 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.8E-32 | 18 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.455 | 18 | 78 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.87E-16 | 21 | 78 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-24 | 21 | 76 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.9E-9 | 23 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.0E-23 | 119 | 164 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MEGGGREGYN GVIMTMTRDP KPRLRWTADL HDRFVDAVTK LGGPDKATPK SVLRLMGLKG 60 LTLYHLKSHL QKYRLGQQAQ KQNEEVHKEN SRCSYVNFSN RSLAPNTSYR GDDEGGEIPI 120 AEALRCQIEV QKRLEEQLKV QKKLQMRIEA QGKYLQSVLE KAQRSLSLDG PGSLEASRAE 180 LTEFNSALSN FMENMNKDSK QNIIEVNNFY SKSHGSAFYN QEVGREQNRD QKPKVEGGSI 240 QFDLNIKGSN DLVSAGGAEM DANMVSSYRV * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-18 | 21 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-18 | 21 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-18 | 21 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-18 | 21 | 74 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26430 | 1e-164 | somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G009600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015043 | 1e-126 | AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003516829.1 | 0.0 | myb family transcription factor PHL11 isoform X1 | ||||
Refseq | XP_028226914.1 | 0.0 | myb family transcription factor PHL11-like | ||||
Swissprot | C0SVS4 | 2e-76 | PHLB_ARATH; Myb family transcription factor PHL11 | ||||
TrEMBL | I1J4K9 | 0.0 | I1J4K9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G01300.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5101 | 31 | 42 | Representative plant | OGRP78 | 17 | 262 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45580.1 | 9e-78 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G009600.1.p |
Entrez Gene | 100810146 |
Publications ? help Back to Top | |||
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