PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G005500.3.p
Common NameGLYMA_01G005500, LOC100795246
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 449aa    MW: 50566.4 Da    PI: 7.0603
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G005500.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM115.64.9e-36471891128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 
                          lp+G++F+Ptd+el+ e+L++kve+k+++ +        +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+     
  Glyma.01G005500.3.p  47 LPAGVKFDPTDQELI-EHLEAKVEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnec 134
                          799************.99*********5553344444434666646**********.555666799******************845555 PP

                  NAM  78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                               + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Glyma.01G005500.3.p 135 dlqGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189
                          54433778************.999***********5547999999*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.11E-3843208IPR003441NAC domain
PROSITE profilePS5100533.08247208IPR003441NAC domain
PfamPF023652.9E-1648189IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MSKISNLSSV SSSDLIDAKL EEHQLCGSKQ CPGCGHKFEG KPDWLGLPAG VKFDPTDQEL  60
IEHLEAKVEA KNMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY  120
TTGTRKRRKI QNECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT  180
NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS ATTGEGSGEP NNSGRRDSGS  240
GSCSSKEIVT HRDEMSAVVG VPPMTSFTHH HPLDIQQLKP DHFSFIPFRK SFDEVGIGEA  300
STAREVMQAS GSCEEVHERH LAQVTPHHHQ LQQHAHHHQI SNSAFHISRP SHPISTIISP  360
PPLHHTSIIL DDNSYHVSRI MLQNENFQQQ QQQHHKLGGR SASGLEELIM GCTSTEIKEE  420
SSITNAQEAE WLKYSSYWPD PDNQDHHG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A6e-134518913140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G005500.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006572929.10.0NAC domain-containing protein 75 isoform X2
RefseqXP_028226433.10.0NAC domain-containing protein 75-like isoform X2
SwissprotQ9M0F81e-140NAC75_ARATH; NAC domain-containing protein 75
TrEMBLA0A445LWZ40.0A0A445LWZ4_GLYSO; NAC domain-containing protein 75 isoform A
TrEMBLK7K1430.0K7K143_SOYBN; Uncharacterized protein
STRINGGLYMA01G00880.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56620.11e-123NAC domain containing protein 99
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]