PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.01G005500.1.p | ||||||||
Common Name | GLYMA_01G005500, LOC100795246 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 452aa MW: 50981.9 Da PI: 7.1335 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 115.6 | 5e-36 | 47 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra..... 77 lp+G++F+Ptd+el+ e+L++kve+k+++ + +i+ +i++++P++Lp v+ + + +fF++ +k+y+tg+rk+r+ Glyma.01G005500.1.p 47 LPAGVKFDPTDQELI-EHLEAKVEAKNMKSHPlidefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKiqnec 134 799************.99*********5553344444434666646**********.555666799******************845555 PP NAM 78 ...tksgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +g+++g+kk+Lv+y g+++k+ekt+Wvmh+y+l Glyma.01G005500.1.p 135 dlqGGETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 189 54433778************.999***********5547999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.12E-38 | 43 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.082 | 47 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-16 | 48 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 452 aa Download sequence Send to blast |
MSKISNLSSV SSSDLIDAKL EEHQLCGSKQ CPGCGHKFEG KPDWLGLPAG VKFDPTDQEL 60 IEHLEAKVEA KNMKSHPLID EFIPTIEGED GICYTHPEKL PGVTRDGLSR HFFHRPSKAY 120 TTGTRKRRKI QNECDLQGGE TRWHKTGKTR PVMVNGKQKG CKKILVLYTN FGKNRKPEKT 180 NWVMHQYHLG QHEEEKEGEL VVSKIFYQTQ PRQCNWSDRS ATTGEGSGEP NNSGRRDSGS 240 GSCSSKEIVT HRDEMSAVVG VPPMTSFTHH HPLDIQQLKP DHFSFIPFRK SFDERMQVGI 300 GEASTAREVM QASGSCEEVH ERHLAQVTPH HHQLQQHAHH HQISNSAFHI SRPSHPISTI 360 ISPPPLHHTS IILDDNSYHV SRIMLQNENF QQQQQQHHKL GGRSASGLEE LIMGCTSTEI 420 KEESSITNAQ EAEWLKYSSY WPDPDNQDHH G* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-13 | 45 | 189 | 13 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00460 | DAP | Transfer from AT4G29230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.01G005500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 0.0 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006572925.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_006572927.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_006572928.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_014619824.1 | 0.0 | NAC domain-containing protein 75 isoform X1 | ||||
Refseq | XP_028226411.1 | 0.0 | NAC domain-containing protein 75-like isoform X1 | ||||
Refseq | XP_028226419.1 | 0.0 | NAC domain-containing protein 75-like isoform X1 | ||||
Refseq | XP_028226426.1 | 0.0 | NAC domain-containing protein 75-like isoform X1 | ||||
TrEMBL | I1J4G0 | 0.0 | I1J4G0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA01G00880.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4520 | 34 | 58 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G56620.1 | 1e-123 | NAC domain containing protein 99 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.01G005500.1.p |
Entrez Gene | 100795246 |