PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.01G003000.1.p
Common NameGLYMA_01G003000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 279aa    MW: 30181.1 Da    PI: 9.2548
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.01G003000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.62.9e-1397141347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT+eE+  ++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
  Glyma.01G003000.1.p  97 PWTEEEHRTFLVGLEKLGKGDWRGISRNYVTSRTPTQVASHAQKY 141
                          8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.106.7E-4320IPR001878Zinc finger, CCHC-type
PROSITE profilePS501588.532318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.80990146IPR017930Myb domain
SuperFamilySSF466891.64E-1791146IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-1893144IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.604.6E-1194140IPR009057Homeodomain-like
SMARTSM007172.2E-1094144IPR001005SANT/Myb domain
CDDcd001673.96E-997142No hitNo description
PfamPF002497.9E-1197141IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRKCSHCGN IGHNSRTCAS FRATNFVGVR LFGVQLADIS STSSNSLSMK KSFSMDSFPS  60
SSSPSSSFSS SRTSIGYLSD SDGLIVGAQE IRKKGVPWTE EEHRTFLVGL EKLGKGDWRG  120
ISRNYVTSRT PTQVASHAQK YFIRLATMNK KKRRSSLFDM VGNGITNPIS SSNCKSSKCE  180
IEDDVTLSLV QLQDTKLDEQ KDSDKYCEAG PAGAEHEAVP LWLHLQMKSS NNNVAAVVPD  240
LELTLAVSKG KAKTLLGLEQ TQTKSSPDSF LLGPISVT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149153KKKRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in all tissues, with the highest level in senescent leaves. {ECO:0000269|PubMed:12172034}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor that binds to 5'-TATCCA-3' elements in gene promoters. Contributes to the sugar-repressed transcription of promoters containing SRS or 5'-TATCCA-3' elements. Transcription repressor involved in a cold stress response pathway that confers cold tolerance. Suppresses the DREB1-dependent signaling pathway under prolonged cold stress. DREB1 responds quickly and transiently while MYBS3 responds slowly to cold stress. They may act sequentially and complementarily for adaptation to short- and long-term cold stress (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.01G003000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by sucrose and gibberellic acid (GA) (PubMed:12172034). Induced by cold stress in roots and shoots. Induced by salt stress in shoots. Down-regulated by abscisic aci (ABA) in shoots (PubMed:20130099). {ECO:0000269|PubMed:12172034, ECO:0000269|PubMed:20130099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0977050.0BT097705.1 Soybean clone JCVI-FLGm-16G4 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235955.20.0MYB transcription factor MYB128
SwissprotQ7XC579e-51MYBS3_ORYSJ; Transcription factor MYBS3
TrEMBLI1J4B90.0I1J4B9_SOYBN; Uncharacterized protein
STRINGGLYMA01G00600.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Representative plantOGRP3941699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-49MYB_related family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Su CF, et al.
    A novel MYBS3-dependent pathway confers cold tolerance in rice.
    Plant Physiol., 2010. 153(1): p. 145-58
    [PMID:20130099]