PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca232235G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | MYB_related | ||||||||
Protein Properties | Length: 63aa MW: 7193.08 Da PI: 7.7854 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.6 | 1.2e-12 | 6 | 52 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT+ +l+ +a + + ++ +W++ ar +g g+t +++k+++q++ Gh_Sca232235G01 6 NWTPKQNKLFENALAIYDKDtpdRWHKLARAVG-GKTVEEVKLHYQNL 52 8********************************.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51293 | 10.015 | 2 | 57 | IPR017884 | SANT domain |
SMART | SM00717 | 8.2E-10 | 3 | 55 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.57E-14 | 5 | 61 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.42E-8 | 6 | 53 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.4E-6 | 6 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-9 | 6 | 52 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MASGSNWTPK QNKLFENALA IYDKDTPDRW HKLARAVGGK TVEEVKLHYQ NLVDDIKQIE 60 SGH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 5e-24 | 2 | 62 | 6 | 66 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9055 | 1e-101 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012440477.1 | 7e-41 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_016684660.1 | 7e-41 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_016752914.1 | 6e-41 | PREDICTED: protein RADIALIS-like 3 | ||||
Refseq | XP_017605578.1 | 8e-41 | PREDICTED: protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 3e-25 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A0B0NYJ3 | 2e-39 | A0A0B0NYJ3_GOSAR; DnaJ subfamily C member 2 | ||||
TrEMBL | A0A0D2TSD6 | 2e-39 | A0A0D2TSD6_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8J2U3 | 2e-39 | A0A1U8J2U3_GOSHI; protein RADIALIS-like 3 | ||||
TrEMBL | A0A1U8PRM9 | 1e-39 | A0A1U8PRM9_GOSHI; protein RADIALIS-like 3 | ||||
TrEMBL | A0A2P5W7V1 | 2e-39 | A0A2P5W7V1_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.009G273300.1 | 3e-40 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.1 | 1e-27 | RAD-like 6 |