PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca204211G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WRKY | ||||||||
Protein Properties | Length: 67aa MW: 7557.39 Da PI: 9.7833 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 64 | 2.4e-20 | 36 | 67 | 2 | 33 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCp 33 +DgynWrKYGqK vkg+ef rsYYrCt+++C+ Gh_Sca204211G01 36 EDGYNWRKYGQKLVKGNEFVRSYYRCTHPNCQ 67 8******************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 16.145 | 30 | 67 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.1E-17 | 31 | 67 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.98E-17 | 32 | 67 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-7 | 35 | 67 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.6E-15 | 36 | 67 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 67 aa Download sequence Send to blast |
QQGNAYSMTS KKQSLTPSPS PGIDGSSPIV REKASEDGYN WRKYGQKLVK GNEFVRSYYR 60 CTHPNCQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed to similar levels in root and flower, to a somewhat lower level in stem and to low levels in leaf and siliques. {ECO:0000269|PubMed:8972846}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Binds to a 5'-CGTTGACCGAG-3' consensus core sequence which contains a W box, a frequently occurring elicitor-responsive cis-acting element. {ECO:0000269|PubMed:8972846}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid (SA). {ECO:0000269|PubMed:17264121}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF669766 | 3e-36 | KF669766.1 Gossypium hirsutum WRKY transcription factor 46 (WRKY46) mRNA, complete cds. | |||
GenBank | KM438474 | 3e-36 | KM438474.1 Gossypium aridum WRKY95 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016743483.1 | 4e-42 | PREDICTED: WRKY transcription factor 1-like isoform X1 | ||||
Refseq | XP_016746117.1 | 6e-42 | PREDICTED: WRKY transcription factor 1-like | ||||
Refseq | XP_017606310.1 | 5e-42 | PREDICTED: WRKY transcription factor 1 | ||||
Swissprot | Q9SI37 | 7e-23 | WRKY1_ARATH; WRKY transcription factor 1 | ||||
TrEMBL | A0A0B0PEV3 | 1e-40 | A0A0B0PEV3_GOSAR; WRKY transcription factor 1-like protein | ||||
TrEMBL | A0A1U8NZI0 | 1e-40 | A0A1U8NZI0_GOSHI; WRKY transcription factor 1-like isoform X1 | ||||
TrEMBL | A0A1U8P4G5 | 1e-40 | A0A1U8P4G5_GOSHI; WRKY transcription factor 1-like | ||||
TrEMBL | A0A2P5S363 | 1e-40 | A0A2P5S363_GOSBA; Uncharacterized protein | ||||
TrEMBL | A0A2P5W9X4 | 1e-40 | A0A2P5W9X4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.001G192900.1 | 3e-39 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7949 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G04880.2 | 2e-22 | zinc-dependent activator protein-1 |
Publications ? help Back to Top | |||
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