PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gh_Sca145821G01 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 63aa MW: 7294.48 Da PI: 5.0201 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 116.8 | 1e-36 | 1 | 63 | 30 | 92 |
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 +kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+trtdifdfl Gh_Sca145821G01 1 MKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFL 63 9*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 1.65E-22 | 1 | 63 | IPR009072 | Histone-fold |
Pfam | PF00808 | 5.5E-15 | 1 | 54 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.6E-27 | 1 | 63 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MKADEDVRMI SAEAPILFAK ACELFILELT IRSWLHAEEN KRRTLQKNDI AAAITRTDIF 60 DFL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-36 | 1 | 63 | 27 | 89 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 41 | 47 | RRTLQKN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Ghi.9838 | 1e-104 | boll| ovule |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342}. | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous. Present in etiolated seedlings. {ECO:0000269|PubMed:11250072, ECO:0000269|PubMed:17322342, ECO:0000269|PubMed:9662544}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters (By similarity). Involved in the abscisic acid (ABA) signaling pathway. {ECO:0000250, ECO:0000269|PubMed:17322342}. | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002284041.1 | 1e-39 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 | ||||
Refseq | XP_003602805.1 | 2e-39 | nuclear transcription factor Y subunit C-1 isoform X2 | ||||
Refseq | XP_004138046.1 | 2e-39 | PREDICTED: nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_008464428.1 | 2e-39 | PREDICTED: nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_009149806.1 | 2e-39 | PREDICTED: nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_010026475.1 | 1e-39 | PREDICTED: nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_010250693.1 | 1e-39 | PREDICTED: nuclear transcription factor Y subunit C-1-like isoform X2 | ||||
Refseq | XP_010663766.1 | 1e-39 | PREDICTED: nuclear transcription factor Y subunit C-1 isoform X2 | ||||
Refseq | XP_013461673.1 | 2e-39 | nuclear transcription factor Y subunit C-1 isoform X1 | ||||
Refseq | XP_013727066.1 | 2e-39 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_016169923.2 | 2e-39 | LOW QUALITY PROTEIN: nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_022039073.1 | 2e-39 | nuclear transcription factor Y subunit C-1-like isoform X1 | ||||
Refseq | XP_022039075.1 | 1e-39 | nuclear transcription factor Y subunit C-1-like isoform X2 | ||||
Refseq | XP_022134838.1 | 2e-39 | nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_022885495.1 | 2e-39 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_022921750.1 | 2e-39 | nuclear transcription factor Y subunit C-1-like | ||||
Refseq | XP_022987443.1 | 2e-39 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_023516854.1 | 2e-39 | nuclear transcription factor Y subunit C-1 | ||||
Refseq | XP_028765104.1 | 2e-39 | nuclear transcription factor Y subunit C-1-like isoform X2 | ||||
Refseq | XP_028766187.1 | 2e-39 | nuclear transcription factor Y subunit C-1-like | ||||
Swissprot | Q9FMV5 | 3e-40 | NFYC4_ARATH; Nuclear transcription factor Y subunit C-4 | ||||
Swissprot | Q9SMP0 | 2e-40 | NFYC1_ARATH; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A1U7ZPU6 | 3e-38 | A0A1U7ZPU6_NELNU; nuclear transcription factor Y subunit C-1-like isoform X2 | ||||
TrEMBL | A0A251US04 | 3e-38 | A0A251US04_HELAN; Putative histone-fold protein | ||||
TrEMBL | A0A2U1M706 | 2e-38 | A0A2U1M706_ARTAN; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A438EY75 | 3e-38 | A0A438EY75_VITVI; Nuclear transcription factor Y subunit C-1 | ||||
TrEMBL | A0A4D9AFA2 | 2e-38 | A0A4D9AFA2_SALSN; Uncharacterized protein | ||||
STRING | XP_006493208.1 | 8e-39 | (Citrus sinensis) | ||||
STRING | evm.model.supercontig_13.107 | 2e-39 | (Carica papaya) | ||||
STRING | XP_008464428.1 | 6e-39 | (Cucumis melo) | ||||
STRING | XP_004138046.1 | 6e-39 | (Cucumis sativus) | ||||
STRING | Bra018046.1-P | 6e-39 | (Brassica rapa) | ||||
STRING | GLYMA06G17780.1 | 8e-39 | (Glycine max) | ||||
STRING | AES73056 | 6e-39 | (Medicago truncatula) | ||||
STRING | XP_007137908.1 | 7e-39 | (Phaseolus vulgaris) | ||||
STRING | cassava4.1_015422m | 8e-39 | (Manihot esculenta) | ||||
STRING | cassava4.1_034343m | 8e-39 | (Manihot esculenta) | ||||
STRING | Solyc03g110860.2.1 | 8e-39 | (Solanum lycopersicum) | ||||
STRING | XP_009779358.1 | 8e-39 | (Nicotiana sylvestris) | ||||
STRING | XP_009618952.1 | 8e-39 | (Nicotiana tomentosiformis) | ||||
STRING | XP_009619035.1 | 8e-39 | (Nicotiana tomentosiformis) | ||||
STRING | PGSC0003DMT400039470 | 8e-39 | (Solanum tuberosum) | ||||
STRING | Migut.I00537.1.p | 8e-39 | (Erythranthe guttata) | ||||
STRING | XP_008798937.1 | 7e-39 | (Phoenix dactylifera) | ||||
STRING | A0A087GWB6 | 8e-39 | (Arabis alpina) | ||||
STRING | XP_010026475.1 | 5e-39 | (Eucalyptus grandis) | ||||
STRING | XP_006436849.1 | 8e-39 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48590.1 | 9e-43 | nuclear factor Y, subunit C1 |